View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15283_low_16 (Length: 250)
Name: NF15283_low_16
Description: NF15283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15283_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 87; Significance: 8e-42; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 55 - 243
Target Start/End: Original strand, 25763424 - 25763609
Alignment:
| Q |
55 |
tttcaacctcagcattatagaacatacgaatgaagtataactctcttaatgttttttctttggctagataacagccaaacatacttaaccctgatggccc |
154 |
Q |
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|||||| |||| |||||||||||||| |||||| |||||||||||||| ||||| |||||||||||| ||| || | | | |||||| |||| ||||| |
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| T |
25763424 |
tttcaatctcaccattatagaacatagaaatgaaatataactctcttaacgttttatctttggctagaaaaccgctatatacacttaatcctgctggcc- |
25763522 |
T |
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| Q |
155 |
tcttcttggaacttcagccaacacttcagcctttggaggtccattaatggagtctttaagatcataaaccaatatagagtctgaggatg |
243 |
Q |
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||||||||| |||| |||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||| | |||||||| |
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| T |
25763523 |
--ttcttggaaattcacccaatacttcagcctttggaggtccattagttgagtctttaagatcataaaccaatatagaatttgaggatg |
25763609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 68 - 228
Target Start/End: Original strand, 25746931 - 25747088
Alignment:
| Q |
68 |
attatagaacatacgaatgaagtataactctcttaatgttttttctttggctagataacagccaaacatacttaaccctgatggccctcttcttggaact |
167 |
Q |
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||||||| ||||| ||||||||||||||||||||| ||||| |||||||||||| ||| | | | |||| ||| || ||||| ||||||||| | |
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| T |
25746931 |
attatagtacatagaaatgaagtataactctcttaacgttttatctttggctagaaaactgatatatgaacttgaccttgctggcc---ttcttggaaat |
25747027 |
T |
|
| Q |
168 |
tcagccaacacttcagcctttggaggtccattaatggagtctttaagatcataaaccaata |
228 |
Q |
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| T |
25747028 |
ttagccaacacttcagcctttggaggtccattagtggagtctttcagatcataaaccaata |
25747088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 229
Target Start/End: Original strand, 25755450 - 25755648
Alignment:
| Q |
28 |
tgaaacgttcagagaaaacacgtcgtctttcaacctcagcattatagaacatacgaatgaagtataactctcttaatgttttttctttggctagataaca |
127 |
Q |
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||||||| || |||| ||||||| | |||||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||| |||||| || |
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| T |
25755450 |
tgaaacggtcggagacaacacgttgagtttcaatctcacaattatagaacatagaaatgaagtataactctcttaacgttttatctttagctagaaaaat |
25755549 |
T |
|
| Q |
128 |
gccaaacatacttaaccctgatggccctcttcttggaacttcagccaacacttcagcctttggaggtccattaatggagtctttaagatcataaaccaat |
227 |
Q |
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|| | | |||| | |||| ||| ||||||||| |||||||||||||| |||||| |||||||||||| |||||||||| ||||||||||||||| |
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| T |
25755550 |
gcaatatgaacttgatcctgccggca---ttcttggaaattcagccaacacttgagccttcggaggtccattagtggagtctttcagatcataaaccaat |
25755646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 57 - 238
Target Start/End: Original strand, 25733037 - 25733215
Alignment:
| Q |
57 |
tcaacctcagcattatagaacatacgaatgaagtataactctcttaatgttttttctttggctagataacagccaaacatacttaaccctgatggccctc |
156 |
Q |
| |
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|||| |||| |||||||||||| | ||||| ||||||||||||||| ||||| |||||||||||| ||| || | | ||||| | |||| | || ||| |
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| T |
25733037 |
tcaatctcaccattatagaacacataaatgaggtataactctcttaacgttttatctttggctagaaaactgctatatatactcgatcctgctagcgctc |
25733136 |
T |
|
| Q |
157 |
ttcttggaacttcagccaacacttcagcctttggaggtccattaatggagtctttaagatcataaaccaatatagagtctga |
238 |
Q |
| |
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|| |||| |||||| |||||||||| ||| ||||| |||| |||| |||||||||||||||||||| ||||| ||||| |
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| T |
25733137 |
tt---ggaagttcagctaacacttcaggcttccgaggtgcattggtggaatctttaagatcataaaccaaaatagaatctga |
25733215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 57 - 238
Target Start/End: Original strand, 25740738 - 25740916
Alignment:
| Q |
57 |
tcaacctcagcattatagaacatacgaatgaagtataactctcttaatgttttttctttggctagataacagccaaacatacttaaccctgatggccctc |
156 |
Q |
| |
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|||| |||| |||||||||||| | ||||| ||||||||||||||| |||| |||||||||||| ||| || | ||||| | |||| |||| ||| |
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| T |
25740738 |
tcaatctcaccattatagaacacagaaatgaggtataactctcttaacattttatctttggctagaaaactgctatgtatactcgatcctgctggcgctc |
25740837 |
T |
|
| Q |
157 |
ttcttggaacttcagccaacacttcagcctttggaggtccattaatggagtctttaagatcataaaccaatatagagtctga |
238 |
Q |
| |
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|| |||| |||||| |||||||||||||| ||||| |||| |||| |||||||||||||||||||| ||||| ||||| |
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| T |
25740838 |
tt---ggaagttcagctaacacttcagccttccgaggtgcattggtggaatctttaagatcataaaccaaaatagaatctga |
25740916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 173 - 241
Target Start/End: Complemental strand, 30149374 - 30149306
Alignment:
| Q |
173 |
caacacttcagcctttggaggtccattaatggagtctttaagatcataaaccaatatagagtctgagga |
241 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
30149374 |
caacactttagcctttggaggtccattaatggagtctttgagatcataaaccaatatagaatctgagga |
30149306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 173 - 241
Target Start/End: Complemental strand, 30155706 - 30155638
Alignment:
| Q |
173 |
caacacttcagcctttggaggtccattaatggagtctttaagatcataaaccaatatagagtctgagga |
241 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
30155706 |
caacactttagcctttggaggtccattaatggagtctttgagatcataaaccaatatagaatctgagga |
30155638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 241
Target Start/End: Complemental strand, 30154113 - 30154045
Alignment:
| Q |
173 |
caacacttcagcctttggaggtccattaatggagtctttaagatcataaaccaatatagagtctgagga |
241 |
Q |
| |
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|||||||| |||||||||||||||||||| ||||||||| ||||||||||| |||| | | |||||||| |
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| T |
30154113 |
caacactttagcctttggaggtccattaacggagtctttgagatcataaacgaatacataatctgagga |
30154045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 246
Target Start/End: Complemental strand, 8294911 - 8294837
Alignment:
| Q |
172 |
ccaacacttcagcctttggaggtccattaatggagtctttaagatcataaaccaatatagagtctgaggatgggt |
246 |
Q |
| |
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||||||||| ||| |||||||||||||| |||||||||| ||||||||||| || ||||| | ||||||||||| |
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| T |
8294911 |
ccaacactttagcttttggaggtccatttgtggagtctttgagatcataaactaaaatagaatatgaggatgggt |
8294837 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 135 - 248
Target Start/End: Original strand, 16489767 - 16489873
Alignment:
| Q |
135 |
atacttaaccctgatggccctcttcttggaacttcagccaacacttcagcctttggaggtccattaatggagtctttaagatcataaaccaatatagagt |
234 |
Q |
| |
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|||||| | |||| ||||| ||||||| ||| |||| ||||||| || |||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
16489767 |
atacttgatcctggtggccttcttcttagaagttcaaccaacacctctgcctttggaggt-------tggagtctttaagatcataaaccaatatcgagt |
16489859 |
T |
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| Q |
235 |
ctgaggatgggtca |
248 |
Q |
| |
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| |||||||||||| |
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| T |
16489860 |
ccgaggatgggtca |
16489873 |
T |
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