View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15283_low_24 (Length: 224)

Name: NF15283_low_24
Description: NF15283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15283_low_24
NF15283_low_24
[»] chr7 (3 HSPs)
chr7 (90-165)||(1288200-1288275)
chr7 (18-83)||(1288754-1288819)
chr7 (18-72)||(29477817-29477873)
[»] chr3 (1 HSPs)
chr3 (18-83)||(48435435-48435500)
[»] chr1 (5 HSPs)
chr1 (18-83)||(31064435-31064502)
chr1 (18-83)||(12906621-12906688)
chr1 (18-83)||(36725187-36725254)
chr1 (18-83)||(19309158-19309225)
chr1 (18-83)||(27761389-27761456)
[»] chr6 (2 HSPs)
chr6 (18-83)||(28969592-28969659)
chr6 (18-83)||(32814619-32814686)
[»] scaffold0555 (1 HSPs)
scaffold0555 (18-82)||(4756-4822)
[»] chr8 (1 HSPs)
chr8 (18-54)||(34517678-34517714)
[»] chr5 (2 HSPs)
chr5 (18-83)||(16747778-16747845)
chr5 (18-83)||(18265054-18265121)
[»] chr4 (2 HSPs)
chr4 (18-71)||(40684423-40684478)
chr4 (18-83)||(55081250-55081317)


Alignment Details
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 90 - 165
Target Start/End: Complemental strand, 1288275 - 1288200
Alignment:
Q  90 cactaatattgtgtgtataatctacctgatatgggacatagtaatttttcaattcacacaaacacacttggtgttc 165  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1288275 cactaatattgtgtgtataatctaccggatatgggacataataatttttcaattcacacaaacacacttggtgttc 1288200  T

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Target: chr7; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 1288819 - 1288754
Alignment:
Q  18 cttaagaacactctttaaatacgacgggacataaaaagggagaagaaatgaatagtttgtcaacac 83  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1288819 cttaagaacactctttaaatacgacgggatataaaaagggagaagaaatgaatagtttgtcaacac 1288754  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 29477873 - 29477817
Alignment:
Q  18 cttaagaacactctttaaatacgacgggacataaaa--agggagaagaaatgaatag 72  Q
    |||||||||||||||||||| ||| |||||| ||||  |||||||||||| ||||||    
T  29477873 cttaagaacactctttaaatccgaagggacagaaaaggagggagaagaaaagaatag 29477817  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 48435500 - 48435435
Alignment:
Q  18 cttaagaacactctttaaatacgacgggacataaaaagggagaagaaatgaatagtttgtcaacac 83  Q
    ||||||||||||||||||||  || ||||||||||||| |||| |||| |||||| ||||||||||    
T  48435500 cttaagaacactctttaaatctgaagggacataaaaagagagaggaaaagaatagcttgtcaacac 48435435  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 31064435 - 31064502
Alignment:
Q  18 cttaagaacactctttaaatacgacgggacataaaa--agggagaagaaatgaatagtttgtcaacac 83  Q
    |||||||||||||||||||| ||| |||||||||||  |||||||| ||| |||||||| ||||||||    
T  31064435 cttaagaacactctttaaatccgaagggacataaaaagagggagaataaaagaatagttcgtcaacac 31064502  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 12906621 - 12906688
Alignment:
Q  18 cttaagaacactctttaaatacgacgggacataaaa--agggagaagaaatgaatagtttgtcaacac 83  Q
    |||||||||||||||||||| ||| |||||| ||||  |||||||||||| |||||| | ||||||||    
T  12906621 cttaagaacactctttaaatccgaagggacagaaaaagagggagaagaaaagaatagctcgtcaacac 12906688  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 36725187 - 36725254
Alignment:
Q  18 cttaagaacactctttaaatacgacgggacataaaa--agggagaagaaatgaatagtttgtcaacac 83  Q
    |||||||||||||||||||| ||| |||||| ||||  |||||||||||| |||||| | ||||||||    
T  36725187 cttaagaacactctttaaatccgaagggacagaaaaagagggagaagaaaagaatagctcgtcaacac 36725254  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 19309225 - 19309158
Alignment:
Q  18 cttaagaacactctttaaatacgacgggacataaaa--agggagaagaaatgaatagtttgtcaacac 83  Q
    |||||||||||||||||||| ||| ||| || ||||  |||||||||||| |||||| | ||||||||    
T  19309225 cttaagaacactctttaaatccgaagggtcagaaaaagagggagaagaaaagaatagctcgtcaacac 19309158  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 27761456 - 27761389
Alignment:
Q  18 cttaagaacactctttaaatacgacgggacataaaa--agggagaagaaatgaatagtttgtcaacac 83  Q
    |||||||||||||||||||| ||| |||||| ||||  ||||||| |||| |||||| | ||||||||    
T  27761456 cttaagaacactctttaaattcgaagggacagaaaaagagggagaggaaaagaatagctcgtcaacac 27761389  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 28969659 - 28969592
Alignment:
Q  18 cttaagaacactctttaaatacgacgggacat--aaaaagggagaagaaatgaatagtttgtcaacac 83  Q
    ||||||||||||||| |||| |||||||||||  ||| |||||||||||| |||||| | ||||||||    
T  28969659 cttaagaacactcttaaaatccgacgggacatgaaaagagggagaagaaaagaatagctcgtcaacac 28969592  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 32814686 - 32814619
Alignment:
Q  18 cttaagaacactctttaaatacgacgggacataaaa--agggagaagaaatgaatagtttgtcaacac 83  Q
    ||||||||||||||||||||  ||||||||||||||  ||||||| |||| |||||| | ||||||||    
T  32814686 cttaagaacactctttaaatttgacgggacataaaaagagggagaggaaaagaatagctcgtcaacac 32814619  T

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Target: scaffold0555 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 4756 - 4822
Alignment:
Q  18 cttaagaacactctttaaatacgacgggacataaaa--agggagaagaaatgaatagtttgtcaaca 82  Q
    |||||||||||||||||||| ||| |||||| ||||  |||||||||||| |||||| | |||||||    
T  4756 cttaagaacactctttaaatccgaagggacaaaaaaagagggagaagaaaagaatagctcgtcaaca 4822  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 34517678 - 34517714
Alignment:
Q  18 cttaagaacactctttaaatacgacgggacataaaaa 54  Q
    ||||| |||||||||||||| ||||||||||||||||    
T  34517678 cttaaaaacactctttaaatccgacgggacataaaaa 34517714  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 16747845 - 16747778
Alignment:
Q  18 cttaagaacactctttaaatacgacgggacataaaaa--gggagaagaaatgaatagtttgtcaacac 83  Q
    |||||||||| | ||||||| ||| || |||||||||  |||||||||||||||||| | ||||||||    
T  16747845 cttaagaacattttttaaatccgatggaacataaaaaaagggagaagaaatgaatagctcgtcaacac 16747778  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 18265121 - 18265054
Alignment:
Q  18 cttaagaacactctttaaatacgacgggacataaaa--agggagaagaaatgaatagtttgtcaacac 83  Q
    |||||||||||||||||||| ||| |||||| ||||  ||||||| |||| |||||| | ||||||||    
T  18265121 cttaagaacactctttaaatccgaagggacagaaaaagagggagaggaaaagaatagctcgtcaacac 18265054  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 40684478 - 40684423
Alignment:
Q  18 cttaagaacactctttaaatacgacgggacataaaa--agggagaagaaatgaata 71  Q
    |||||||||||||||||||| ||| |||||| ||||  |||||||||||| |||||    
T  40684478 cttaagaacactctttaaatccgaagggacagaaaaacagggagaagaaaagaata 40684423  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 55081317 - 55081250
Alignment:
Q  18 cttaagaacactctttaaatacgacgggacataaaa--agggagaagaaatgaatagtttgtcaacac 83  Q
    |||||||||||||||||||| ||| |||||| ||||  ||||||| |||| |||||| | ||||||||    
T  55081317 cttaagaacactctttaaattcgaagggacagaaaaagagggagaggaaaagaatagctcgtcaacac 55081250  T

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