View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15283_low_25 (Length: 216)
Name: NF15283_low_25
Description: NF15283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15283_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 9e-97; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 6151582 - 6151764
Alignment:
| Q |
16 |
tactgtgagagctctatgatatatggttgttgttatagtgtgaatgcaggtaagaagctataaaatatggccaaccaataccgtttaggaaaccaacata |
115 |
Q |
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| T |
6151582 |
tactgtgagagctctatgatatatggttgttgttatagtgtgaatgcaggtaagaagctataaaatatggccaaccaataccgtttaggaaaccaacata |
6151681 |
T |
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| Q |
116 |
gtgaagaaactaacccacatcgtgatgcagtatatctaagactttttgggagaaatattagcattatcaatggaggacccaga |
198 |
Q |
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| T |
6151682 |
gtgaagaaactaacccacatcgtgatgcagtatatctaagactttttgggacaaatattagcattatcaatggaggacccaga |
6151764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 32 - 192
Target Start/End: Original strand, 6145178 - 6145338
Alignment:
| Q |
32 |
tgatatatggttgttgttatagtgtgaatgcaggtaagaagctataaaatatggccaaccaataccgtttaggaaaccaacatagtgaagaaactaaccc |
131 |
Q |
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| T |
6145178 |
tgatatatggttgttgttatggcgtgcatgcaggtaagaagctataaaatatggccaaccaataccattttggaaaccaacgtaatgaagaaagtagccc |
6145277 |
T |
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| Q |
132 |
acatcgtgatgcagtatatctaagactttttgggagaaatattagcattatcaatggagga |
192 |
Q |
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| T |
6145278 |
atatcgtaatgcagcatatcttagactttttggatcaaatattcgcattatcaatggagga |
6145338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 32 - 192
Target Start/End: Original strand, 6125739 - 6125904
Alignment:
| Q |
32 |
tgatatatggttgttgttatagtgtgaatgcaggtaagaagctataaaatatggccaaccaataccgtttaggaaaccaacatagtgaagaaactaa--- |
128 |
Q |
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| T |
6125739 |
tgatatatggttgttgttatggagtgcatgtaggaaagaagctataaaatatggccaaccaataccgtttaggaaaccagcataatgaagaaattaaaga |
6125838 |
T |
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| Q |
129 |
--cccacatcgtgatgcagtatatctaagactttttgggagaaatattagcattatcaatggagga |
192 |
Q |
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| T |
6125839 |
agcccatattgtaatgcagtatatctaagactttttggatcgaatatttgcattatcaatgaagga |
6125904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 32 - 179
Target Start/End: Original strand, 28755297 - 28755444
Alignment:
| Q |
32 |
tgatatatggttgttgttatagtgtgaatgcaggtaagaagctataaaatatggccaaccaataccgtttaggaaaccaacatagtgaagaaactaaccc |
131 |
Q |
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| T |
28755297 |
tgatatatggttgttgttatgtagtgcatgcaggtaagaagctacaatctatggccaaccaatatcgtttaggaaaccgtcagaatgaagaaaggatctc |
28755396 |
T |
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| Q |
132 |
acatcgtgatgcagtatatctaagactttttgggagaaatattagcat |
179 |
Q |
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| T |
28755397 |
atatcatgatgcaatatatttaatactttttgggtcaaatattagcat |
28755444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 124
Target Start/End: Complemental strand, 33732023 - 33731931
Alignment:
| Q |
32 |
tgatatatggttgttgttatagtgtgaatgcaggtaagaagctataaaatatggccaaccaataccgtttaggaaaccaacatagtgaagaaa |
124 |
Q |
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| T |
33732023 |
tgatatatggttgctgttatggtgtgcatgcaggtaagaagttgcaatctatggccaaccaatatcgtttaggaaatcgtcataatgaagaaa |
33731931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 32 - 107
Target Start/End: Complemental strand, 33803402 - 33803327
Alignment:
| Q |
32 |
tgatatatggttgttgttatagtgtgaatgcaggtaagaagctataaaatatggccaaccaataccgtttaggaaa |
107 |
Q |
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| T |
33803402 |
tgatatatggttgttgttatggtgtgcatgcaggcaagaagttgcaatctatggccaaccaatatcgtttaggaaa |
33803327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 178
Target Start/End: Complemental strand, 28755803 - 28755712
Alignment:
| Q |
85 |
gccaaccaataccgtttaggaaaccaacatagtgaagaaactaacccacatcgtgatgcagtatatctaagactttttgggagaaatattagca |
178 |
Q |
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| T |
28755803 |
gccaaccaataccgtttaggaaaccatcagaatgaagaaaggagcctatattgtgatgcaatatatttaag--tttttgggtcaaatattagca |
28755712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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