View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15283_low_5 (Length: 419)
Name: NF15283_low_5
Description: NF15283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15283_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 74 - 404
Target Start/End: Complemental strand, 1712595 - 1712258
Alignment:
| Q |
74 |
caagttagttgaataatgaatttataa--------gttaaaaaggtttgaaactaatttttattttgagacaagttttatctcaacttcaaattaaaacc |
165 |
Q |
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| T |
1712595 |
caagttagttgaataatgaatttataaaaacagttgttaaaaaggtttgaaactaatttttattttgagacaagttttatctcaacttcaaattaaaacc |
1712496 |
T |
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| Q |
166 |
tactatttagacaaaaacaattatcttcaaaagcatccaaaataacatgtcaacatcaattttataatcctagaatcacttttacctctcacataatgaa |
265 |
Q |
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| T |
1712495 |
tactatttagacaaaaacaattatcttcaaaagcatccaaaataacatgtcaacatcaattttataatcctagaatcacttttacctctcacatagtgaa |
1712396 |
T |
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| Q |
266 |
tatacataagaattcaannnnnnnnctcgtcacaaataaccctaaatgttgttaaacaacatttctatattttatacctctaacttttggaataacataa |
365 |
Q |
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| T |
1712395 |
tatacataagaattcaa-tttttttctcgtcacaaataaccctaaatgttgttaaacaacatttctatattttatacctctaacttttggaataacataa |
1712297 |
T |
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| Q |
366 |
agaactataaccctattattctctaaagatatgtatatt |
404 |
Q |
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| T |
1712296 |
agaactataaccctattattctctaaagatatgtatatt |
1712258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 47
Target Start/End: Complemental strand, 1712645 - 1712610
Alignment:
| Q |
12 |
atgaagccaacaaatataaaatcaaggcaacgtaac |
47 |
Q |
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| T |
1712645 |
atgaagccaacaactataaaatcaaggcaacgtaac |
1712610 |
T |
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