View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15284_high_13 (Length: 336)
Name: NF15284_high_13
Description: NF15284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15284_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 8 - 319
Target Start/End: Complemental strand, 52465413 - 52465103
Alignment:
| Q |
8 |
tttgtttttgtgatttcgtagtctttgtacgattccgtttatctttatatgttgatagtaaaagatagaataatgatatttgtatcgacattttaaacaa |
107 |
Q |
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| T |
52465413 |
tttgtttttgtaattttgtcgtctttgcacgattccgtttatctttatatgttgatagtaaaagatagaataatgatatttgtatcgacattttaaacaa |
52465314 |
T |
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| Q |
108 |
tttagggaca--gagaaaattattcaaaaattattttaaatttgttgtccaaatatgatagatgaagaaacatgttatttgtacaaagtagtg--ataca |
203 |
Q |
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| T |
52465313 |
tttagggacaaagagaaatttattcaaaaattattttaaatttgttgtccaaatatgatagatgaagaaatatgt-----gtacaaagtagtgtgataca |
52465219 |
T |
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| Q |
204 |
tagtagggattggggagtaatattctctttacttgtattgttgtatgtcgacagaactatacagtacaccaacaagtgggtcaagatattttgttctgat |
303 |
Q |
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| T |
52465218 |
taatagggattggggagtaatattctctttacctgtattgttgtatgtcgacagaactatacagtacaccaacaagtgggtcaagatattttgttctgat |
52465119 |
T |
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| Q |
304 |
gaagagacgtgataac |
319 |
Q |
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| T |
52465118 |
gaagagacgtgataac |
52465103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 29284832 - 29284868
Alignment:
| Q |
3 |
ttttatttgtttttgtgatttcgtagtctttgtacga |
39 |
Q |
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| T |
29284832 |
ttttatttgtttttgtgatttcgtcgtctttgcacga |
29284868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 24114722 - 24114690
Alignment:
| Q |
1 |
tattttatttgtttttgtgatttcgtagtcttt |
33 |
Q |
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| T |
24114722 |
tattttatttgtttttgtgatttcgttgtcttt |
24114690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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