View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15284_high_20 (Length: 248)

Name: NF15284_high_20
Description: NF15284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15284_high_20
NF15284_high_20
[»] scaffold0043 (6 HSPs)
scaffold0043 (19-248)||(29295-29524)
scaffold0043 (19-248)||(44153-44382)
scaffold0043 (159-247)||(50850-50938)
scaffold0043 (30-91)||(50734-50795)
scaffold0043 (34-100)||(31250-31316)
scaffold0043 (33-90)||(46119-46176)
[»] scaffold1163 (1 HSPs)
scaffold1163 (19-248)||(1012-1228)
[»] chr2 (1 HSPs)
chr2 (27-248)||(22395608-22395816)
[»] chr3 (17 HSPs)
chr3 (24-248)||(27387816-27388027)
chr3 (156-247)||(26631346-26631437)
chr3 (25-120)||(27380751-27380846)
chr3 (157-243)||(28085664-28085750)
chr3 (25-120)||(19478162-19478257)
chr3 (159-247)||(27350750-27350838)
chr3 (30-91)||(27350893-27350954)
chr3 (157-248)||(28006576-28006667)
chr3 (32-110)||(26631470-26631548)
chr3 (30-91)||(27981195-27981256)
chr3 (27-91)||(26632323-26632387)
chr3 (30-125)||(28085769-28085864)
chr3 (30-120)||(28006691-28006781)
chr3 (33-101)||(19482255-19482323)
chr3 (157-244)||(26632184-26632271)
chr3 (42-91)||(27380925-27380974)
chr3 (159-248)||(27981049-27981140)
[»] scaffold1805 (1 HSPs)
scaffold1805 (25-120)||(23-118)
[»] chr5 (1 HSPs)
chr5 (159-248)||(6164269-6164358)


Alignment Details
Target: scaffold0043 (Bit Score: 202; Significance: 1e-110; HSPs: 6)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 29524 - 29295
Alignment:
Q  19 gtgtcgggttccttcctaaaatgtaggaaacgaagactttagattagaaaagccttctgttgccaaattcctcccaagttcaacttttcttaagtcgacc 118  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  29524 gtgtggggttccttcctaaaatgtaggaaacgaagactttaaattagaaaagccttctgttgccaaattcctcgcaagttcagcttttcttaagtcgacc 29425  T
Q  119 tcagttgttcactactgacttgtgttgtgtggaagaatattctttactttgttgtgcccactcactgcattcagcgttcaactcttccttctgtacatca 218  Q
    ||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29424 tcagttgttcactactgacttctgttgcgtggaagaaaattctttactttgttgtgcccactcactgcattcagcgttcaactcttccttctgtacatca 29325  T
Q  219 catttgttcactactgccttcaaatcatct 248  Q
    ||||||||||||||||||||||||||||||    
T  29324 catttgttcactactgccttcaaatcatct 29295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 44382 - 44153
Alignment:
Q  19 gtgtcgggttccttcctaaaatgtaggaaacgaagactttagattagaaaagccttctgttgccaaattcctcccaagttcaacttttcttaagtcgacc 118  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||  |||||||| |||||||||||||||||    
T  44382 gtgtggggttccttcctaaaatgtaggaaacgaagactttaaattagaaaagctttctgttgccaaattccttgcaagttcagcttttcttaagtcgacc 44283  T
Q  119 tcagttgttcactactgacttgtgttgtgtggaagaatattctttactttgttgtgcccactcactgcattcagcgttcaactcttccttctgtacatca 218  Q
    ||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44282 tcagttgttcactactgacttctgttgcgtggaagaaaattctttactttgttgtgcccactcactgcattcagcgttcaactcttccttctgtacatca 44183  T
Q  219 catttgttcactactgccttcaaatcatct 248  Q
    ||||||||||||||||||||||||||||||    
T  44182 catttgttcactactgccttcaaatcatct 44153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 159 - 247
Target Start/End: Original strand, 50850 - 50938
Alignment:
Q  159 tctttactttgttgtgcccactcactgcattcagcgttcaactcttccttctgtacatcacatttgttcactactgccttcaaatcatc 247  Q
    ||||| |||||||||||||| ||| |||||||||| |||||||  | |||||| |||| ||||||||||||||||| ||||||||||||    
T  50850 tctttgctttgttgtgcccattcagtgcattcagccttcaacttctgcttctgaacataacatttgttcactactgacttcaaatcatc 50938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 50734 - 50795
Alignment:
Q  30 cttcctaaaatgtaggaaacgaagactttagattagaaaagccttctgttgccaaattcctc 91  Q
    ||||||||| ||||||||| ||||| |||| ||||| |||||||||||||||||||||||||    
T  50734 cttcctaaattgtaggaaaggaagattttaaattagcaaagccttctgttgccaaattcctc 50795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 31316 - 31250
Alignment:
Q  34 ctaaaatgtaggaaacgaagactttagattagaaaagccttctgttgccaaattcctcccaagttca 100  Q
    ||||||||||||||||||||| |||| ||| | |||||||||| |||||||| ||||| || |||||    
T  31316 ctaaaatgtaggaaacgaagattttaaatttgcaaagccttcttttgccaaagtcctcgcacgttca 31250  T

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Target: scaffold0043; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 46176 - 46119
Alignment:
Q  33 cctaaaatgtaggaaacgaagactttagattagaaaagccttctgttgccaaattcct 90  Q
    |||||||||||||||||||||| |||| ||| | |||||||||| |||||||| ||||    
T  46176 cctaaaatgtaggaaacgaagattttaaatttgcaaagccttcttttgccaaagtcct 46119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1163 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: scaffold1163
Description:

Target: scaffold1163; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 1228 - 1012
Alignment:
Q  19 gtgtcgggttccttcctaaaatgtaggaaacgaagactttagattagaaaagccttctgttgccaaattcctcccaagttcaacttttcttaagtcgacc 118  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || | ||| ||| |||||||||||||    
T  1228 gtgtggggttccttcctaaaatgtaggaaacgaagactttaaattagaaaagccttctgttgccaaattcctcgcacgctcagcttctcttaagtcgacc 1129  T
Q  119 tcagttgttcactactgacttgtgttgtgtggaagaatattctttactttgttgtgcccactcactgcattcagcgttcaactcttccttctgtacatca 218  Q
    || |||| |         |  ||| ||     ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1128 tcggttgatg--------caagtgctg-----aagcaaattctttactttgttgtgcccactcactgcattcagcgttcaactcttccttctgaacatca 1042  T
Q  219 catttgttcactactgccttcaaatcatct 248  Q
    |||||||| ||||||| |||||||||||||    
T  1041 catttgtttactactgacttcaaatcatct 1012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 27 - 248
Target Start/End: Complemental strand, 22395816 - 22395608
Alignment:
Q  27 ttccttcctaaaatgtaggaaacgaagactttagattagaaaagccttctgttgccaaattcctcccaagttcaacttttcttaagtcgacctcagttgt 126  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| || ||||| ||| ||||||||| ||||| ||||     
T  22395816 ttccttcctaaaatgtaggaaacgaagactttaaattagaaaagccttctgctgccaaattcctcgcacgttcagcttctcttaagtcaacctcggttga 22395717  T
Q  127 tcactactgacttgtgttgtgtggaagaatattctttactttgttgtgcccactcactgcattcagcgttcaactcttccttctgtacatcacatttgtt 226  Q
    |  | |            |||  |||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  22395716 tg-caa------------gtgcagaagcaaattctttactttgttgtgcccactcactgcattcagtgttcaactcttccttctgaacatcacatttgtt 22395630  T
Q  227 cactactgccttcaaatcatct 248  Q
    |||||||| |||||||||||||    
T  22395629 cactactgacttcaaatcatct 22395608  T

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Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 24 - 248
Target Start/End: Original strand, 27387816 - 27388027
Alignment:
Q  24 gggttccttcctaaaatgtaggaaacgaagactttagattagaaaagccttctgttgccaaattcctcccaagttcaacttttcttaagtcgacctcagt 123  Q
    |||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||  || ||||| ||| |||||||||||| ||  |    
T  27387816 gggttccttcctaatatgtaggaaatgaagactttaaattagaaaagccttctgttgccaaattcctagcacgttcagcttctcttaagtcgacatcgtt 27387915  T
Q  124 tgttcactactgacttgtgttgtgtggaagaatattctttactttgttgtgcccactcactgcattcagcgttcaactcttccttctgtacatcacattt 223  Q
    || |  | |            |||  |||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||| |    
T  27387916 tgatg-caa------------gtgcagaagcaaattctttacttttttgtgcccactcactgcattcagcgttcaactcttccttctgaacattacatct 27388002  T
Q  224 gttcactactgccttcaaatcatct 248  Q
    ||||||||||| |||||||||||||    
T  27388003 gttcactactgacttcaaatcatct 27388027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 26631437 - 26631346
Alignment:
Q  156 tattctttactttgttgtgcccactcactgcattcagcgttcaactcttccttctgtacatcacatttgttcactactgccttcaaatcatc 247  Q
    ||||||||||||||||||||||||||| | |||||||| |||||||  |||||||| ||||||||||||||||  |||| ||||||||||||    
T  26631437 tattctttactttgttgtgcccactcagtacattcagccttcaacttatccttctgaacatcacatttgttcaggactgacttcaaatcatc 26631346  T

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Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 25 - 120
Target Start/End: Complemental strand, 27380846 - 27380751
Alignment:
Q  25 ggttccttcctaaaatgtaggaaacgaagactttagattagaaaagccttctgttgccaaattcctcccaagttcaacttttcttaagtcgacctc 120  Q
    |||||||||||||||||||||||| |||||||||| ||| | ||||||||||||||||| ||||||| || ||||| ||| ||||| |||||||||    
T  27380846 ggttccttcctaaaatgtaggaaatgaagactttaaatttgcaaagccttctgttgccagattcctcacacgttcagcttctcttacgtcgacctc 27380751  T

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Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 157 - 243
Target Start/End: Complemental strand, 28085750 - 28085664
Alignment:
Q  157 attctttactttgttgtgcccactcactgcattcagcgttcaactcttccttctgtacatcacatttgttcactactgccttcaaat 243  Q
    ||||||||||||| |||||||| ||| |||||||||| ||||||| ||||||||| |||||||||||||||| ||||| ||||||||    
T  28085750 attctttactttgctgtgcccattcagtgcattcagccttcaacttttccttctgaacatcacatttgttcagtactgacttcaaat 28085664  T

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Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 120
Target Start/End: Complemental strand, 19478257 - 19478162
Alignment:
Q  25 ggttccttcctaaaatgtaggaaacgaagactttagattagaaaagccttctgttgccaaattcctcccaagttcaacttttcttaagtcgacctc 120  Q
    |||||||||||||||||||||||| |||||||| | ||  | ||||||||||||||||| ||||||| || ||||| ||| ||||| |||||||||    
T  19478257 ggttccttcctaaaatgtaggaaatgaagacttcaaatctgcaaagccttctgttgccagattcctcgcacgttcagcttctcttacgtcgacctc 19478162  T

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Target: chr3; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 159 - 247
Target Start/End: Complemental strand, 27350838 - 27350750
Alignment:
Q  159 tctttactttgttgtgcccactcactgcattcagcgttcaactcttccttctgtacatcacatttgttcactactgccttcaaatcatc 247  Q
    ||||| |||||  ||||||| ||| |||||||||| |||||||  | |||||| |||||||||||||||||||||| ||||||||||||    
T  27350838 tctttgctttgcagtgcccattcagtgcattcagccttcaacttctgcttctgaacatcacatttgttcactactgacttcaaatcatc 27350750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 27350954 - 27350893
Alignment:
Q  30 cttcctaaaatgtaggaaacgaagactttagattagaaaagccttctgttgccaaattcctc 91  Q
    ||||||||| ||||||||| ||||| |||| ||||| |||||||||||||||||||||||||    
T  27350954 cttcctaaattgtaggaaaggaagattttaaattagcaaagccttctgttgccaaattcctc 27350893  T

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Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 157 - 248
Target Start/End: Complemental strand, 28006667 - 28006576
Alignment:
Q  157 attctttactttgttgtgcccactcactgcattcagcgttcaactcttccttctgtacatcacatttgttcactactgccttcaaatcatct 248  Q
    |||||||||||||||||||||||||   ||||||||| |||||||    |||||| ||||| ||| |||||||| ||| |||||||||||||    
T  28006667 attctttactttgttgtgcccactccgcgcattcagccttcaacttgctcttctgaacatcgcatgtgttcacttctgacttcaaatcatct 28006576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 110
Target Start/End: Complemental strand, 26631548 - 26631470
Alignment:
Q  32 tcctaaaatgtaggaaacgaagactttagattagaaaagccttctgttgccaaattcctcccaagttcaacttttctta 110  Q
    ||||||||||||||||| || || |||| ||| | ||||||||||||||| ||||||||| |||||||| ||| |||||    
T  26631548 tcctaaaatgtaggaaaggatgattttaaatttgcaaagccttctgttgcgaaattcctcgcaagttcagcttctctta 26631470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 27981256 - 27981195
Alignment:
Q  30 cttcctaaaatgtaggaaacgaagactttagattagaaaagccttctgttgccaaattcctc 91  Q
    ||||||||| ||||||||| ||||| |||| ||||| ||||||||||||| |||||||||||    
T  27981256 cttcctaaattgtaggaaatgaagattttaaattagcaaagccttctgtttccaaattcctc 27981195  T

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Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 26632387 - 26632323
Alignment:
Q  27 ttccttcctaaaatgtaggaaacgaagactttagattagaaaagccttctgttgccaaattcctc 91  Q
    |||||||||||||||||||||| || || |||| ||| | |||||||||| ||||||||||||||    
T  26632387 ttccttcctaaaatgtaggaaatgatgattttaaatttgtaaagccttcttttgccaaattcctc 26632323  T

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Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 125
Target Start/End: Complemental strand, 28085864 - 28085769
Alignment:
Q  30 cttcctaaaatgtaggaaacgaagactttagattagaaaagccttctgttgccaaattcctcccaagttcaacttttcttaagtcgacctcagttg 125  Q
    ||||||||||||||||||| ||||| |||| |||   |||||||||||||||||| ||| || || ||||| ||| | ||| ||||||||| ||||    
T  28085864 cttcctaaaatgtaggaaaggaagattttaaatttacaaagccttctgttgccaacttcatcacacgttcagcttctattacgtcgacctccgttg 28085769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 28006781 - 28006691
Alignment:
Q  30 cttcctaaaatgtaggaaacgaagactttagattagaaaagccttctgttgccaaattcctcccaagttcaacttttcttaagtcgacctc 120  Q
    |||| ||||||||||||||| ||||||||| ||| | |||||||||| ||||||| || ||| || ||||  ||| ||||| |||||||||    
T  28006781 cttcttaaaatgtaggaaacaaagactttaaatttgcaaagccttcttttgccaactttctcacacgttctgcttctcttaggtcgacctc 28006691  T

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Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 19482255 - 19482323
Alignment:
Q  33 cctaaaatgtaggaaacgaagactttagattagaaaagccttctgttgccaaattcctcccaagttcaa 101  Q
    ||||||||||||||||| |||| |||| ||| | |||||||||| |||||||| ||||| || ||||||    
T  19482255 cctaaaatgtaggaaacaaagattttaaatttgtaaagccttcttttgccaaagtcctcgcacgttcaa 19482323  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 244
Target Start/End: Complemental strand, 26632271 - 26632184
Alignment:
Q  157 attctttactttgttgtgcccactcactgcattcagcgttcaactcttccttctgtacatcacatttgttcactactgccttcaaatc 244  Q
    ||||| |||||||||||||||||| |   |||||||| |||| || || |||||| |||||||||| ||||| | ||| |||||||||    
T  26632271 attctctactttgttgtgcccacttagaacattcagccttcagctttttcttctgaacatcacattagttcaatgctgacttcaaatc 26632184  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 27380974 - 27380925
Alignment:
Q  42 taggaaacgaagactttagattagaaaagccttctgttgccaaattcctc 91  Q
    ||||||| ||||| |||| ||||| ||||||||||||| |||||||||||    
T  27380974 taggaaatgaagattttaaattagcaaagccttctgttaccaaattcctc 27380925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 248
Target Start/End: Complemental strand, 27981140 - 27981049
Alignment:
Q  159 tctttactttgttgtgcccactcactgcattcagcgttcaactctt--ccttctgtacatcacatttgttcactactgccttcaaatcatct 248  Q
    ||||||||||| |||||||| ||| |||||||| | |||||   ||  ||||||| ||| |||||||||| ||||| | |||||||||||||    
T  27981140 tctttactttgctgtgcccattcaatgcattcaaccttcaatatttcaccttctgaacaacacatttgtttactacggacttcaaatcatct 27981049  T

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Target: scaffold1805 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold1805
Description:

Target: scaffold1805; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 120
Target Start/End: Complemental strand, 118 - 23
Alignment:
Q  25 ggttccttcctaaaatgtaggaaacgaagactttagattagaaaagccttctgttgccaaattcctcccaagttcaacttttcttaagtcgacctc 120  Q
    |||| ||||||||||||||||| | |||||||||| ||| | ||||||||||||||||| ||||||| || ||||| ||| ||||| |||||||||    
T  118 ggtttcttcctaaaatgtaggatatgaagactttaaatttgcaaagccttctgttgccagattcctcacacgttcagcttctcttacgtcgacctc 23  T

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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 159 - 248
Target Start/End: Original strand, 6164269 - 6164358
Alignment:
Q  159 tctttactttgttgtgcccactcactgcattcagcgttcaactcttccttctgtacatcacatttgttcactactgccttcaaatcatct 248  Q
    |||||||||||||||||||| ||| |||||| |||  |||||   |||||||| ||||||||||||||||||||||  ||||||||||||    
T  6164269 tctttactttgttgtgcccattcagtgcatttagccatcaacctctccttctgaacatcacatttgttcactactgatttcaaatcatct 6164358  T

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