View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15284_high_21 (Length: 236)
Name: NF15284_high_21
Description: NF15284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15284_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 35370752 - 35370549
Alignment:
| Q |
17 |
aaggttgagggcacatattggtgcagaggaagctaagaaactagtccacaaagcaattgtactcatcattcttggaggcaacgattttgttaacaattat |
116 |
Q |
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| T |
35370752 |
aaggttgagagcacatattggtgcagaggaagctaagaaactagtcaacaaagcacttgtactcatcattattggaggcaacgattttgttaacaattat |
35370653 |
T |
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| Q |
117 |
tattgggccccattttcagcaagatctcgccaattttctcttccagactacgtgacatatgtcatatctgaattcaaaaattttctaaaggtaatacttc |
216 |
Q |
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| T |
35370652 |
tattgggccccattttcagcaagatctcgccaattttctcttccagactacgtgacatatgtcatatctgaattcaaaaatattctaaaggtaatactcc |
35370553 |
T |
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| Q |
217 |
ttct |
220 |
Q |
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|||| |
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| T |
35370552 |
ttct |
35370549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 13 - 211
Target Start/End: Complemental strand, 35377230 - 35377032
Alignment:
| Q |
13 |
agcaaaggttgagggcacatattggtgcagaggaagctaagaaactagtccacaaagcaattgtactcatcattcttggaggcaacgattttgttaacaa |
112 |
Q |
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| T |
35377230 |
agcaaaggttgagtgcacatattggtgcagaggaagctaagaaactagtccacaaagcaattgtactcatcgttcttggaggcaacgattttgtcaacaa |
35377131 |
T |
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| Q |
113 |
ttattattgggccccattttcagcaagatctcgccaattttctcttccagactacgtgacatatgtcatatctgaattcaaaaattttctaaaggtaat |
211 |
Q |
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| T |
35377130 |
ttattatttggtcccattttcagcaagatctcgccaattttctcttccagattacgtgacctatctcatatctgagtacaaaaaagttctaaaggtaat |
35377032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 27 - 196
Target Start/End: Complemental strand, 35358569 - 35358400
Alignment:
| Q |
27 |
gcacatattggtgcagaggaagctaagaaactagtccacaaagcaattgtactcatcattcttggaggcaacgattttgttaacaattattattgggccc |
126 |
Q |
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||||| ||||||||||||| |||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||| || |||||||||| || || |
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| T |
35358569 |
gcacaaattggtgcagagggagctaaacaactagtcaacaaagcaattgtactcatcatgcttggaggcaacgattttgtcaataattattatttggtcc |
35358470 |
T |
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| Q |
127 |
cattttcagcaagatctcgccaattttctcttccagactacgtgacatatgtcatatctgaattcaaaaa |
196 |
Q |
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| T |
35358469 |
cattttcagctagatctcgccaattttctcttccaaactatgtcacctatctcatatctgagtacaaaaa |
35358400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 214
Target Start/End: Complemental strand, 35373296 - 35373250
Alignment:
| Q |
168 |
gtgacatatgtcatatctgaattcaaaaattttctaaaggtaatact |
214 |
Q |
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| T |
35373296 |
gtgacatatgtcatatctgaattcataaaaattctcaaggtaatact |
35373250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 57 - 163
Target Start/End: Original strand, 48084405 - 48084511
Alignment:
| Q |
57 |
ctagtccacaaagcaattgtactcatcattcttggaggcaacgattttgttaacaattattattgggccccattttcagcaagatctcgccaattttctc |
156 |
Q |
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| T |
48084405 |
ctagtcaacagagcactcgtactcatcactcttggtggcaatgattttgtcaacaactattatttggttcctttttcagcaagatctcgtcaattttctc |
48084504 |
T |
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| Q |
157 |
ttccaga |
163 |
Q |
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| T |
48084505 |
tcccaga |
48084511 |
T |
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