View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15284_high_4 (Length: 468)
Name: NF15284_high_4
Description: NF15284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15284_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 15 - 447
Target Start/End: Original strand, 3151251 - 3151682
Alignment:
| Q |
15 |
aatatctatggtcacaggcatgcaaagaaatgctgctgcagccaagaaaactccacggaattttatttccagcagatgaaactgaacattgatgatacac |
114 |
Q |
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| T |
3151251 |
aatatctatggtcacaggcatgcaaagaaatgctgctgcagccaagaaa-ctccacggaaatttatttccagcagatgaaactaaacattgatgacacac |
3151349 |
T |
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| Q |
115 |
caatggagtacttcttctgtagtgattgggagtgtactagaagagaaagtgagaatcttttgagcactatgaggaatcaaaaatgctattgtggtggaat |
214 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||| || | |
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| T |
3151350 |
caattgagtacttcttctgtagtgattgggagtgtactagaagagaaagtgggagtcttttgagcactatgaggaatcaaaaatgttattgtggtagagt |
3151449 |
T |
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| Q |
215 |
actggacaaagatgtagctccagaacatttgagtttaggaaatggctttgttgaagaaactgctacttttatcatttccgacgatcattttgtgatgcct |
314 |
Q |
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| T |
3151450 |
actggacaaagatgtggctccagaacatctgagtttaggaaatggctttgttgaagaaactgctacttttatcatttccgacgatctttttgtgatgcct |
3151549 |
T |
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| Q |
315 |
aatgttttggcaacagttgtacatctacatcagaagcttggaattgataccaatgatactattgtcgaacaaactgtggaaataagcaagaaagaggtat |
414 |
Q |
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| T |
3151550 |
aatgttttggcaacagttgtacatctacatcagaagcttggaattgataccaatgacactattgtcgaacaaactgtggaaataagcaagaaagaggtat |
3151649 |
T |
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| Q |
415 |
gtttttctatcttctatataatctgtgattttg |
447 |
Q |
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| T |
3151650 |
gtttttctatcttctatataatctgtgattttg |
3151682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 352
Target Start/End: Original strand, 21194706 - 21194788
Alignment:
| Q |
270 |
gaaactgctacttttatcatttccgacgatcattttgtgatgcctaatgttttggcaacagttgtacatctacatcagaagct |
352 |
Q |
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| T |
21194706 |
gaaactgctgcatttattatttccgacgatctttgtgtgatgcctaatgattttggaacagttatacaactacttcaaaagct |
21194788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 352
Target Start/End: Original strand, 21199931 - 21200041
Alignment:
| Q |
242 |
tttgagtttaggaaatggctttgttgaagaaactgctacttttatcatttccgacgatcattttgtgatgcctaatgttttggcaacagttgtacatcta |
341 |
Q |
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| T |
21199931 |
tttgagcttaggaagcggttttgttaaggaaactgctgcatttattatttcagacgatctttatgtgatgcctaatgtttttgggacagttatacaacta |
21200030 |
T |
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| Q |
342 |
catcagaagct |
352 |
Q |
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| T |
21200031 |
cttcacaagct |
21200041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 354
Target Start/End: Original strand, 24284442 - 24284554
Alignment:
| Q |
242 |
tttgagtttaggaaatggctttgttgaagaaactgctacttttatcatttccgacgatcattttgtgatgcctaatgttttggcaacagttgtacatcta |
341 |
Q |
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| T |
24284442 |
tttgagtctaggaaatggctttgctaaggaaaccgccacatttataatttctgatgatcttactgtgatgcctaatgtttttggaacagttataccacta |
24284541 |
T |
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| Q |
342 |
catcagaagcttg |
354 |
Q |
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| T |
24284542 |
cttcaaaagcttg |
24284554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 420
Target Start/End: Complemental strand, 24232270 - 24232120
Alignment:
| Q |
270 |
gaaactgctacttttatcatttccgacgatcattttgtgatgcctaatgttttggcaacagttgtacatctacatcagaagcttggaattgataccaatg |
369 |
Q |
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|||| |||||||||||||||||| || |||| || ||| |||||||||||||| | | || | || |||||| ||| ||||||||| | || || | || |
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| T |
24232270 |
gaaaatgctacttttatcatttctgatgatctttgtgttatgcctaatgtttttggagcaagtttaaatctacttcaaaagcttggagtcgagactattg |
24232171 |
T |
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| Q |
370 |
atactattgtcgaacaaactgtggaaataagcaagaaagaggtatgttttt |
420 |
Q |
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| T |
24232170 |
atgctattgaggaacaagctgttgacatcaacaagaaagaggcatgctttt |
24232120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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