View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15284_high_5 (Length: 426)

Name: NF15284_high_5
Description: NF15284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15284_high_5
NF15284_high_5
[»] chr4 (4 HSPs)
chr4 (4-409)||(1702367-1702773)
chr4 (4-409)||(9991019-9991425)
chr4 (4-409)||(16613370-16613777)
chr4 (4-164)||(7054228-7054387)
[»] chr8 (4 HSPs)
chr8 (38-164)||(8212526-8212653)
chr8 (4-164)||(9290787-9290946)
chr8 (325-389)||(42189006-42189070)
chr8 (378-409)||(42188955-42188986)
[»] scaffold0442 (1 HSPs)
scaffold0442 (4-154)||(12071-12220)
[»] scaffold0320 (1 HSPs)
scaffold0320 (4-164)||(13749-13908)
[»] chr3 (1 HSPs)
chr3 (38-164)||(51424979-51425106)
[»] chr2 (2 HSPs)
chr2 (4-164)||(38981093-38981248)
chr2 (38-164)||(24867138-24867266)
[»] chr6 (1 HSPs)
chr6 (63-121)||(24999617-24999676)


Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 4 - 409
Target Start/End: Original strand, 1702367 - 1702773
Alignment:
Q  4 ataatacttgagcatgtatataatcattcccgctctacttggccttttcatcctactacgtggctttgtttccatattttttgcac-ttctcttggtact 102  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  1702367 ataatacttgagcatgtatataatcatccccgctctacttggccttttcatcctactacgtggctttgtttccatattttttgcaccttctcttggtact 1702466  T
Q  103 ttgatctatctagtgccttctttttcaaacttgcttatactactacttccctcattgattcatgtctagtggctttattaataggtatagattacatcaa 202  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1702467 ttgatctatctagtgccttctttttcaagcttgcttatactactacttcccccattgattcatgtctagtggctttattaataggtatagattacatcaa 1702566  T
Q  203 tcactgcttagaattgtgatcgtactcttagacatgaacaaaatacaatttgattgaaaataaaattaacaaccaataagcttaaaaagattggcaccat 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1702567 tcactgcttagaattgtgatcgtactcttagacatgaacaaaatacaatttgattgaaaataaaattaacaaccaataagcttaaaaagattggcaccat 1702666  T
Q  303 tcagactcttgaaggggtttgtcctcttcctcgtacttcacttcatttcttcttttttataggctacttcatttgctttaatttatgcttgttcttgttt 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1702667 tcagactcttgaaggggtttgtcctcttcctcgtacttcacttcatttcttcttttttataggctacttcatttgctttaatttatgcttgttcttgttt 1702766  T
Q  403 tcccact 409  Q
    |||||||    
T  1702767 tcccact 1702773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 4 - 409
Target Start/End: Original strand, 9991019 - 9991425
Alignment:
Q  4 ataatacttgagcatgtatataatcattcccgctctacttggccttttcatcctactacgtggctttgtttccatattttttgcac-ttctcttggtact 102  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  9991019 ataatacttgagcatgtatataatcatccccgctctacttggccttttcatccaactacgtggctttgtttccatattttttgcaccttctcttggtact 9991118  T
Q  103 ttgatctatctagtgccttctttttcaaacttgcttatactactacttccctcattgattcatgtctagtggctttattaataggtatagattacatcaa 202  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9991119 ttgatctatctagtgccttctttttcaagcttgcttatactactacttccctcattgattcatgtctagtggctttattaataggtatagattacatcaa 9991218  T
Q  203 tcactgcttagaattgtgatcgtactcttagacatgaacaaaatacaatttgattgaaaataaaattaacaaccaataagcttaaaaagattggcaccat 302  Q
    ||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9991219 tcactccttagaattgtgatcgtactcttaaacatgaataaaatacaatttgattgaaaataaaattaacaaccaataagcttaaaaagattggcaccat 9991318  T
Q  303 tcagactcttgaaggggtttgtcctcttcctcgtacttcacttcatttcttcttttttataggctacttcatttgctttaatttatgcttgttcttgttt 402  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| | |||||||||||||||||||    
T  9991319 tcagactctagaaggggtttgtcctcttcctcgtacttcacttcatttcttcttttttataggctacttcattaccttaattttatgcttgttcttgttt 9991418  T
Q  403 tcccact 409  Q
    |||||||    
T  9991419 tcccact 9991425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 4 - 409
Target Start/End: Original strand, 16613370 - 16613777
Alignment:
Q  4 ataatacttgagcatgtatataatcattcccgctctacttggccttttcatcctactacgtggctttgtttccatattttttgcac-ttctcttggtact 102  Q
    |||||||||||| |||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||  |||||| |||||||||||||    
T  16613370 ataatacttgagaatgtatataatcatccccgcactacttggtcttttcatcctactacgtggctttgtttccatattgcttgcaccttctcttggtact 16613469  T
Q  103 ttgatctatctagtgccttctttttcaaacttgcttatactactacttccctcattgattcatgtctagtggctttattaataggtatagattacatcaa 202  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16613470 ttgatctatctagtgccttctttttcaagcttgcttatactactacttccctcattgattcatgtctagtggctttattaataggtatagattacatcaa 16613569  T
Q  203 tcactgcttagaattgtgatcgtactcttagacatgaacaaaatacaatttgattgaaaataaaattaacaaccaataagctt-aaaaagattggcacca 301  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  16613570 tcactgcttagaattgtgatcatactcttagacatgaacgaaatacaatttgattgaaaataaaattaacaaccaataagcttaaaaaagattggaacca 16613669  T
Q  302 ttcagactcttgaaggggtttgtcctcttcctcgtacttcacttcatttcttcttttttataggctacttcatttgctttaatttatgcttgttcttgtt 401  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16613670 ttcagactcttgaaggggtttgtcctcctcctcgtactttacttcatttcttcttttttataggctacttcatttgctttaatttatgcttgttcttgtt 16613769  T
Q  402 ttcccact 409  Q
    ||||||||    
T  16613770 ttcccact 16613777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 4 - 164
Target Start/End: Original strand, 7054228 - 7054387
Alignment:
Q  4 ataatacttgagcatgtatataatcattcccgctctacttggccttttcatcctactacgtggctttgtttccatattttttgcact-tctcttggtact 102  Q
    |||||||||||||||||||||  |||| | ||  |||||||| |||||||||| |||| ||||||||||||| ||||| |||||||  ||||||||||||    
T  7054228 ataatacttgagcatgtatat--tcatcctcgtactacttggtcttttcatcccactatgtggctttgtttctatattgtttgcaccatctcttggtact 7054325  T
Q  103 ttgatctatctagtgccttctttttcaaacttgcttatactactacttccctcattgattca 164  Q
    ||||||| ||| ||||| |||||||||| |||||||||||||||||||||||| ||||||||    
T  7054326 ttgatctttcttgtgccctctttttcaagcttgcttatactactacttccctctttgattca 7054387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 5e-35; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 38 - 164
Target Start/End: Complemental strand, 8212653 - 8212526
Alignment:
Q  38 ctacttggccttttcatcctactacgtggctttgtttccatattttttgcact-tctcttggtactttgatctatctagtgccttctttttcaaacttgc 136  Q
    |||||||| |||||||||| |||| ||||||||||||| |||||||||||||  ||||||||||||||||| | ||| ||||| |||||||||| |||||    
T  8212653 ctacttggtcttttcatcccactatgtggctttgtttctatattttttgcaccatctcttggtactttgatatttcttgtgccctctttttcaagcttgc 8212554  T
Q  137 ttatactactacttccctcattgattca 164  Q
    ||||||||||||||||||| ||||||||    
T  8212553 ttatactactacttccctctttgattca 8212526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 4 - 164
Target Start/End: Complemental strand, 9290946 - 9290787
Alignment:
Q  4 ataatacttgagcatgtatataatcattcccgctctacttggccttttcatcctactacgtggctttgtttccatattttttgcact-tctcttggtact 102  Q
    |||||||||||||||||||||  |||| |  |  |||||||  |||||||||| |||| ||||||||||||| |||||  ||||||  ||||||||||||    
T  9290946 ataatacttgagcatgtatat--tcatcctagtactacttgatcttttcatcccactatgtggctttgtttctatattgcttgcaccatctcttggtact 9290849  T
Q  103 ttgatctatctagtgccttctttttcaaacttgcttatactactacttccctcattgattca 164  Q
    ||||||| ||| ||||| |||||||||| |||||||||||||||||||||||| ||||||||    
T  9290848 ttgatctttctcgtgccctctttttcaagcttgcttatactactacttccctctttgattca 9290787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 325 - 389
Target Start/End: Complemental strand, 42189070 - 42189006
Alignment:
Q  325 cctcttcctcgtacttcacttcatttcttcttttttataggctacttcatttgctttaatttatg 389  Q
    |||||| ||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||    
T  42189070 cctctttctcgtacttcacttcatttattctttttcataggctacttcatttcctttaatttatg 42189006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 409
Target Start/End: Complemental strand, 42188986 - 42188955
Alignment:
Q  378 ctttaatttatgcttgttcttgttttcccact 409  Q
    ||||||||||||||||||||||||||||||||    
T  42188986 ctttaatttatgcttgttcttgttttcccact 42188955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0442 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0442
Description:

Target: scaffold0442; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 4 - 154
Target Start/End: Original strand, 12071 - 12220
Alignment:
Q  4 ataatacttgagcatgtatataatcattcccgctctacttggccttttcatcctactacgtggctttgtttccatattttttgcact-tctcttggtact 102  Q
    |||||||||||||||||||||  |||| | ||  |||||||| |||||||||| |||| ||||||||||||| ||||| |||||||  ||||||||||||    
T  12071 ataatacttgagcatgtatat--tcatcctcgtactacttggtcttttcatccaactatgtggctttgtttctatattgtttgcaccatctcttggtact 12168  T
Q  103 ttgatctatctagtgccttctttttcaaacttgcttatactactacttccct 154  Q
    ||||||| ||| ||||| ||||||| || |||||||||||||||||||||||    
T  12169 ttgatctttcttgtgccctcttttttaagcttgcttatactactacttccct 12220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 4 - 164
Target Start/End: Complemental strand, 13908 - 13749
Alignment:
Q  4 ataatacttgagcatgtatataatcattcccgctctacttggccttttcatcctactacgtggctttgtttccatattttttgcact-tctcttggtact 102  Q
    |||||||||  ||||||||||  |||||| ||  ||||| || |||||||||| |||| ||||||||||||| ||||| |||||||  || |||||||||    
T  13908 ataatacttccgcatgtatat--tcattctcgtactactaggtcttttcatcccactatgtggctttgtttctatattgtttgcaccatcacttggtact 13811  T
Q  103 ttgatctatctagtgccttctttttcaaacttgcttatactactacttccctcattgattca 164  Q
    ||||||| ||| ||||| |||||||||| |||||||||||||||||||||||| ||||||||    
T  13810 ttgatctttcttgtgccctctttttcaagcttgcttatactactacttccctctttgattca 13749  T

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Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 38 - 164
Target Start/End: Complemental strand, 51425106 - 51424979
Alignment:
Q  38 ctacttggccttttcatcctactacgtggctttgtttccatattttttgcact-tctcttggtactttgatctatctagtgccttctttttcaaacttgc 136  Q
    |||||||  |||||||||| |||| ||||||||||||| ||||| |||||||  ||||||||||||||||||| ||| ||||| |||||||||| |||||    
T  51425106 ctacttgatcttttcatcccactatgtggctttgtttctatattgtttgcaccatctcttggtactttgatctttcttgtgccctctttttcaagcttgc 51425007  T
Q  137 ttatactactacttccctcattgattca 164  Q
    |||| |||||||||||||| ||||||||    
T  51425006 ttattctactacttccctctttgattca 51424979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 4 - 164
Target Start/End: Complemental strand, 38981248 - 38981093
Alignment:
Q  4 ataatacttgagcatgtatataatcattcccgctctacttggccttttcatcctactacgtggctttgtttccatattttttgcact-tctcttggtact 102  Q
    |||||||||||||||||||||  |||| | ||  |||||||| |||||||||| |||| | ||||||||||| ||||| |||||||  ||||||||||||    
T  38981248 ataatacttgagcatgtatat--tcatcctcgtactacttggtcttttcatcccactatgcggctttgtttctatattgtttgcaccatctcttggtact 38981151  T
Q  103 ttgatctatctagtgccttctttttcaaacttgcttatactactacttccctcattgattca 164  Q
    ||||||| ||| ||||| ||||||||||    ||||||||||| ||||||||| || |||||    
T  38981150 ttgatctttcttgtgccctctttttcaa----gcttatactaccacttccctctttcattca 38981093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 38 - 164
Target Start/End: Original strand, 24867138 - 24867266
Alignment:
Q  38 ctacttggccttttcatcctactacgtggctttgtttccatattttttgca-cttctcttggtactttgatctatctagtgccttctttttcaa-acttg 135  Q
    ||||||||||||||||||| ||||  ||||||||||  |||||| |||||| ||||| || || |||||| |||| | |||||| |||||||||   |||    
T  24867138 ctacttggccttttcatcccactatttggctttgttctcatattgtttgcaccttctttttgttctttgaactatttggtgcctcctttttcaagtattg 24867237  T
Q  136 cttatactactacttccctcattgattca 164  Q
    ||||||||| ||||||| || ||||||||    
T  24867238 cttatactattacttccttctttgattca 24867266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 24999676 - 24999617
Alignment:
Q  63 gtggctttgtttccatattttttgcac-ttctcttggtactttgatctatctagtgcctt 121  Q
    |||||||| |||||||||| ||||||| ||||||||||||||||||||||||| ||||||    
T  24999676 gtggctttatttccatattgtttgcaccttctcttggtactttgatctatctaatgcctt 24999617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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