View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15284_high_6 (Length: 423)
Name: NF15284_high_6
Description: NF15284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15284_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 51295105 - 51294866
Alignment:
| Q |
1 |
atccagtgctttttctgtaggtataccaaagttacagattcgcactagaaaagtagaacgttataaggtagacaccaaatgatctagctatatgactgca |
100 |
Q |
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| T |
51295105 |
atccagtgctttttctgtaggtataccaaagttacagattcgcactagaaaagtagaacgttataaggtagacaccaaatgatctagctatatgactgca |
51295006 |
T |
|
| Q |
101 |
aagttaatttcattcatgtgatgtgcttactagaaattgctagatatgccgtaaataacctaaaccctaaatatttccttaacatnnnnnnngctaacca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
51295005 |
aagttaatttcattcatgtgatgtgcttactagaaattgctagatatgtcttaaataacctaaaccctaaatatttccttaacataaaaaaagctaacca |
51294906 |
T |
|
| Q |
201 |
aaataaaacaagacggagttgttacataataaaatattgg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
51294905 |
aaataaaacaagacggagttgttacataataaaatattgg |
51294866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 319 - 423
Target Start/End: Complemental strand, 51294784 - 51294682
Alignment:
| Q |
319 |
ttattttgatattcaatgtcattgtaatcatattagtataccctatccatctctttgtgtgcgagtgctacaatacatgcaatatcaaagggaaaagaaa |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51294784 |
ttattttgatattcaatgtcattgtaatcatattagta--ccctatccatctctttgtgtgcgagtgctacaatacatgcaatatcaaagggaaaagaaa |
51294687 |
T |
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| Q |
419 |
gaact |
423 |
Q |
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||||| |
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| T |
51294686 |
gaact |
51294682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 174
Target Start/End: Complemental strand, 2597963 - 2597910
Alignment:
| Q |
121 |
atgtgcttactagaaattgctagatatgccgtaaataacctaaaccctaaatat |
174 |
Q |
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|||||||||||||||||| || ||| | || |||||||||||||| |||||||| |
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| T |
2597963 |
atgtgcttactagaaattacttgatgtaccttaaataacctaaactctaaatat |
2597910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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