View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15284_high_7 (Length: 417)
Name: NF15284_high_7
Description: NF15284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15284_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 13 - 360
Target Start/End: Complemental strand, 52465902 - 52465551
Alignment:
| Q |
13 |
attattctgcaagtctgtttagaatagctacatacaagatgtccggttagtnnnnnnnnnnn----gtccggttaatatgcctaaaatnnnnnnnn-tgt |
107 |
Q |
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| T |
52465902 |
attattctgcaagtctgtttagaatagttacatacaagatgtccggttagtaaaaaaaaaaaaaatgtc-ggttaatatgcctaaaataaaaaaaaatgt |
52465804 |
T |
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| Q |
108 |
cgggttagtattcatcaccgacctcaagatctatgacaccctttacccgagccacttgctgataaatcattatccagaaacacacatcaacaaacataag |
207 |
Q |
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| T |
52465803 |
ccggttagtattcatcaccgacctcaagatctacgacaccctttacccgagccacttgctgataaatcattgtccagaaacacacatcaacaaacataag |
52465704 |
T |
|
| Q |
208 |
tcttctagaaatatgtttaccacttgataaagatagcttatagaaatatgtcctctattctgtctgaaaaaagaaaatatcttctattatcagacgagtt |
307 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||| ||| |
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| T |
52465703 |
tcttctaggaatatgtttaccacttgataaagatagcttatagaaatatgtcctctattctttcggaaaaaagaaaatatcttctatcatcagacgggtt |
52465604 |
T |
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| Q |
308 |
taggtatatgctatcaagaatgatacacgccccaccttctttaacctctaacc |
360 |
Q |
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||||||||||||||||||||||||||||| ||| |||||| |||||| |||| |
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| T |
52465603 |
taggtatatgctatcaagaatgatacacgtccctccttctcgaacctccaacc |
52465551 |
T |
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