View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15284_high_8 (Length: 392)
Name: NF15284_high_8
Description: NF15284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15284_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 41701567 - 41701943
Alignment:
| Q |
1 |
atgtcaacaataaagtgtcgctaattcgagtcaatagtcctccaatagaggggaacatgtggggaaaaaagttagcaagtggtgtatattcatcatttat |
100 |
Q |
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| T |
41701567 |
atgtcaacaataaagtgtcgctaattcgagtcaatagtcctccaatagaggggaacatgtggggaaaaaagttagcaagtggtgtatattcatgatttat |
41701666 |
T |
|
| Q |
101 |
tggtttgannnnnnnnnnnnnnnggagaatctagtatatatatgcagatgataagtgatgggtgattgataagtatccatgactttagattaagtnnnnn |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41701667 |
tggtttgatttttttttttt---ggagaatctagtatatatatgcagatgataagtgatgggtgattgataagtatccatgactttagattaagtaaaaa |
41701763 |
T |
|
| Q |
201 |
nnnnnn-tcaacctttggaggacttttctgtaaaaaatcgcacataatccttcatggattagactaatcataaccatggtggtgctttcctactataaga |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41701764 |
aaaaaaatcaacctttggaggacttttctgtaaaaaatcgcacataatccttcatggattagactaatcataaccatggtggtgctttcctactataaga |
41701863 |
T |
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| Q |
300 |
aaatgaaatttccattttaaaaact------caaacactttccttagttgcaaaaggaagaccactttggaggacaatac |
373 |
Q |
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|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41701864 |
aaatgaaatttccattttaaaactttgagtgaaaacactttccttagttgcaaaaggaagaccactttggaggacaatac |
41701943 |
T |
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