View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15284_high_9 (Length: 363)
Name: NF15284_high_9
Description: NF15284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15284_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 9e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 2299245 - 2299044
Alignment:
| Q |
1 |
tagcttttataataagggatagtaacagcattaaccaaaaggtctatggtacgtcttcacaaccttagaagactcctataattaaagattgctagaccca |
100 |
Q |
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| T |
2299245 |
tagcttttataataagggatagtagcaacattaaccgaaaggtctatggtacgtcttcacaaccttggaagactcctatagttaaagattgctagaccca |
2299146 |
T |
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| Q |
101 |
ttacaacaaaacttctgacatgtaaatggattaaaaactgacaatatagtgtggcaaatgtgacctgcaaacaggaacgaaaaaccttagtatgggcaaa |
200 |
Q |
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| T |
2299145 |
ttacaacaaaacttctgacatgtaaatggatggaaaactgacaatatagtgtggcaaatgtgacctgcaaacatgaacgaaaaaccttagtatgggcgaa |
2299046 |
T |
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| Q |
201 |
ct |
202 |
Q |
| |
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|| |
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| T |
2299045 |
ct |
2299044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 197 - 345
Target Start/End: Complemental strand, 2298998 - 2298849
Alignment:
| Q |
197 |
caaactcctacgattaaactcattcatcatatgaaccacacaaagtagtgtttaaaatgagatagtgagaagttgagtaactcatttatcatg-tataaa |
295 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2298998 |
caaactcctacaattaaactcattcatcatatgaaccacacaaagtagtgttataaatgagatagtgagaagttgagtaactcatttatcatgttataaa |
2298899 |
T |
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| Q |
296 |
gaactaataccattagccattgatcgaagaccaggtccattgtgtttgat |
345 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2298898 |
gaactaataccatttgccattgatcgaagaccaggtccattgtgtttgat |
2298849 |
T |
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