View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15284_low_1 (Length: 664)
Name: NF15284_low_1
Description: NF15284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15284_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 144; Significance: 2e-75; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 130 - 346
Target Start/End: Complemental strand, 48966988 - 48966774
Alignment:
| Q |
130 |
gaggtaattcacaggtactttaaatctttgttgctcttcttcctccatgcccatggtgatgaacttgtttatagcttttgctaaacatcataaagcaaat |
229 |
Q |
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| T |
48966988 |
gaggtaattcacaggtactgtaaaactttgttgctcttcttcctccatg------gtgatgaacttgtttatagcttttgctaaacatcataaagcaaat |
48966895 |
T |
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| Q |
230 |
aagatagagaagtggcttaatttgctttggttgagaagaattaaataagaatgtaatggatgaatgaatactaactagtaga----nnnnnnntatttat |
325 |
Q |
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| T |
48966894 |
aagatagagaagtggcttaatttgctttgcttgagaagaataaaataagaatgtaatggatgaatgaatactaactagtagagggggggggggtatttat |
48966795 |
T |
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| Q |
326 |
taagatgaagaataataataa |
346 |
Q |
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| T |
48966794 |
taagatgaagaataataataa |
48966774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 48967176 - 48967085
Alignment:
| Q |
1 |
tgaagctctgaagcagccaacaagatttggatgatgttggtattggggctgggacttatagttatgaatatgaatcataatgaattgaagaa |
92 |
Q |
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| T |
48967176 |
tgaagctctgaagcagccaacaagatttagatgatgttggtattggagctgggacttataattatgaatatgaatcataatgtgttgaagaa |
48967085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 392 - 462
Target Start/End: Complemental strand, 48966751 - 48966681
Alignment:
| Q |
392 |
caagagcaagcgtattattgaatgattattaatatggattcttaaaagtcaaaacaagtcagttcacttgc |
462 |
Q |
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| T |
48966751 |
caagagcaagcgtattattgaatgattattaatatggattcttaaaagtcaaaacaagtcagttcacttgc |
48966681 |
T |
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