View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15284_low_12 (Length: 353)

Name: NF15284_low_12
Description: NF15284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15284_low_12
NF15284_low_12
[»] chr2 (4 HSPs)
chr2 (15-332)||(16567753-16568073)
chr2 (32-139)||(24447928-24448035)
chr2 (29-79)||(7670385-7670435)
chr2 (29-136)||(40054520-40054627)
[»] chr7 (4 HSPs)
chr7 (15-139)||(10026385-10026509)
chr7 (23-87)||(44107776-44107840)
chr7 (29-80)||(41482477-41482528)
chr7 (109-139)||(37967319-37967349)
[»] chr8 (7 HSPs)
chr8 (15-139)||(7547805-7547929)
chr8 (29-139)||(22573083-22573193)
chr8 (34-139)||(40028770-40028875)
chr8 (15-87)||(32889951-32890023)
chr8 (29-123)||(31734280-31734374)
chr8 (29-81)||(9028691-9028743)
chr8 (95-139)||(26543879-26543923)
[»] chr1 (5 HSPs)
chr1 (29-139)||(45792735-45792844)
chr1 (29-139)||(26793705-26793815)
chr1 (54-139)||(12855317-12855402)
chr1 (29-87)||(9383284-9383342)
chr1 (39-139)||(49236115-49236215)
[»] chr5 (5 HSPs)
chr5 (35-139)||(13039663-13039767)
chr5 (29-139)||(13109657-13109767)
chr5 (31-139)||(13417063-13417170)
chr5 (53-139)||(16290799-16290885)
chr5 (29-139)||(34731217-34731327)
[»] chr4 (9 HSPs)
chr4 (29-139)||(22202874-22202984)
chr4 (24-129)||(35320583-35320688)
chr4 (29-81)||(26183660-26183712)
chr4 (29-123)||(19181470-19181564)
chr4 (95-139)||(26635551-26635595)
chr4 (16-102)||(26635305-26635391)
chr4 (29-123)||(55945709-55945803)
chr4 (29-78)||(44126013-44126062)
chr4 (29-81)||(45413827-45413879)
[»] chr3 (3 HSPs)
chr3 (15-131)||(48936344-48936458)
chr3 (29-136)||(7038555-7038662)
chr3 (53-139)||(32490851-32490937)
[»] chr6 (1 HSPs)
chr6 (24-66)||(2565882-2565924)


Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 15 - 332
Target Start/End: Original strand, 16567753 - 16568073
Alignment:
Q  15 caaaggagaagtgagataggattagaaataggttaaacttatcatttcctgttggtgcaccaaacaatggattaagacatgatatgataatctaatcata 114  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  16567753 caaaggaggagtgagataggattagaaataggttaaacttatccttttctgttggtgcaccaaacaacggattaagacatgatatgataatcaaatcata 16567852  T
Q  115 tcatgtctccttatcctgcgcaccagccataaggttgcataaatatttgataagttggttcatggatttaaatatgcaattatcttcttcctcacactta 214  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  16567853 tcatgtctccttatcctgcgcaccagccgtaaggttgcaaaaatatttgataagttggttcacggatttaaatatgcaattatctccttcctcacactta 16567952  T
Q  215 tgcatgagtttcgccgttacactatttg---nnnnnnnnntccaattattatatttgatagcttcattcaatatcccttttgttttctattaatggatat 311  Q
    ||||||||||||||||||||||||||||            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  16567953 tgcatgagtttcgccgttacactatttgaaagaaaaaaaatccaattattatatttgacagcttcattcaatatcccttttgttttctattaatggatat 16568052  T
Q  312 gaaatggtgtagtggtgtgtc 332  Q
    |||||||||||||||||||||    
T  16568053 gaaatggtgtagtggtgtgtc 16568073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 32 - 139
Target Start/End: Complemental strand, 24448035 - 24447928
Alignment:
Q  32 aggattagaaataggttaaacttatcatttcctgttggtgcaccaaacaatggattaagacatgatatgataatctaatcatatcatgtctccttatcct 131  Q
    ||||||| |||||| |||||||||||||||||| | ||  |||||||||| ||||| ||||| ||||  ||| | |||||||||||||||||||||||||    
T  24448035 aggattacaaatagattaaacttatcatttcctatgggcacaccaaacaacggattgagacaggataaaatattttaatcatatcatgtctccttatcct 24447936  T
Q  132 gcgcacca 139  Q
    ||||||||    
T  24447935 gcgcacca 24447928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 7670435 - 7670385
Alignment:
Q  29 gataggattagaaataggttaaacttatcatttcctgttggtgcaccaaac 79  Q
    |||||||||||||| |||||||||||||||||| || ||||||||||||||    
T  7670435 gataggattagaaacaggttaaacttatcattttctattggtgcaccaaac 7670385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 136
Target Start/End: Original strand, 40054520 - 40054627
Alignment:
Q  29 gataggattagaaataggttaaacttatcatttcctgttggtgcaccaaacaatggattaagacatgatatgataatctaatcatatcatgtctccttat 128  Q
    ||||||||||  |||||||| |  ||||||||| || ||||||||||||||||  |||| | | | ||||| ||| | | ||||||||||||||| ||||    
T  40054520 gataggattaacaataggtttagtttatcattttctattggtgcaccaaacaagagatttaaataggatataatagtgttatcatatcatgtctcgttat 40054619  T
Q  129 cctgcgca 136  Q
    | ||||||    
T  40054620 catgcgca 40054627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 15 - 139
Target Start/End: Complemental strand, 10026509 - 10026385
Alignment:
Q  15 caaaggagaagtgagataggattagaaataggttaaacttatcatttcctgttggtgcaccaaacaatggattaagacatgatatgataatctaatcata 114  Q
    |||||||| |||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  10026509 caaaggaggagtgggatatgattagaaataggttaaacttatcatttcatgttggtgcaccaaacaagggattaagacaagatatgataatctaatcata 10026410  T
Q  115 tcatgtctccttatcctgcgcacca 139  Q
    || ||||||||||||||||||||||    
T  10026409 tcctgtctccttatcctgcgcacca 10026385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 44107840 - 44107776
Alignment:
Q  23 aagtgagataggattagaaataggttaaacttatcatttcctgttggtgcaccaaacaatggatt 87  Q
    |||| |||||||||||| || ||||| || |||||||||||| |||||||||||||||| |||||    
T  44107840 aagtaagataggattaggaaaaggtttaatttatcatttcctattggtgcaccaaacaaaggatt 44107776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 41482477 - 41482528
Alignment:
Q  29 gataggattagaaataggttaaacttatcatttcctgttggtgcaccaaaca 80  Q
    |||| ||||| ||||||||| || ||||| ||||||||||||||||||||||    
T  41482477 gatatgattaaaaataggtttaagttatcctttcctgttggtgcaccaaaca 41482528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 139
Target Start/End: Complemental strand, 37967349 - 37967319
Alignment:
Q  109 atcatatcatgtctccttatcctgcgcacca 139  Q
    |||||||||||||||||||||||||||||||    
T  37967349 atcatatcatgtctccttatcctgcgcacca 37967319  T

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Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 15 - 139
Target Start/End: Complemental strand, 7547929 - 7547805
Alignment:
Q  15 caaaggagaagtgagataggattagaaataggttaaacttatcatttcctgttggtgcaccaaacaatggattaagacatgatatgataatctaatcata 114  Q
    ||||||||||||| |||||||| | ||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||| ||||||||    
T  7547929 caaaggagaagtgggataggataaaaaataggttaaacttatcatttcttgttggtgcaccaaacaacggattaagacaagatatgataatgtaatcata 7547830  T
Q  115 tcatgtctccttatcctgcgcacca 139  Q
    || ||||||||||| || |||||||    
T  7547829 tcttgtctccttattcttcgcacca 7547805  T

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Target: chr8; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 29 - 139
Target Start/End: Complemental strand, 22573193 - 22573083
Alignment:
Q  29 gataggattagaaataggttaaacttatcatttcctgttggtgcaccaaacaatggattaagacatgatatgataatctaatcatatcatgtctccttat 128  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| || || |||| |||| ||||||||||||||||||||||||    
T  22573193 gataggattagaaacaggttaaacttatcatttcctgttggtgcaccaaacaacggattgagtcaggataggatattctaatcatatcatgtctccttat 22573094  T
Q  129 cctgcgcacca 139  Q
    | |||||||||    
T  22573093 catgcgcacca 22573083  T

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Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 34 - 139
Target Start/End: Complemental strand, 40028875 - 40028770
Alignment:
Q  34 gattagaaataggttaaacttatcatttcctgttggtgcaccaaacaatggattaagacatgatatgataatctaatcatatcatgtctccttatcctgc 133  Q
    ||||||||| |||||||| ||||||||||||||||| |||||||||||  |||| || || ||||||||| | |||||||||| ||||||||||||||||    
T  40028875 gattagaaaaaggttaaagttatcatttcctgttggcgcaccaaacaacagattgaggcaggatatgatattttaatcatatcctgtctccttatcctgc 40028776  T
Q  134 gcacca 139  Q
    ||||||    
T  40028775 gcacca 40028770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 32890023 - 32889951
Alignment:
Q  15 caaaggagaagtgagataggattagaaataggttaaacttatcatttcctgttggtgcaccaaacaatggatt 87  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| | |||| ||| ||||||| |||||    
T  32890023 caaaggagaagtgggataggattagaaataggttaaacttatcatttcatattggggcatcaaacaacggatt 32889951  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 123
Target Start/End: Complemental strand, 31734374 - 31734280
Alignment:
Q  29 gataggattagaaataggttaaacttatcatttcctgttggtgcaccaaacaatggattaagacatgatatgataatctaatcatatcatgtctc 123  Q
    |||| |||| |||||||||| || |||||||||| | |||||||||||||||| |||||||  || |||| || | ||  |||||||||||||||    
T  31734374 gataagattggaaataggtttaatttatcatttcttattggtgcaccaaacaacggattaaagcaggataggaaagtcctatcatatcatgtctc 31734280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 9028691 - 9028743
Alignment:
Q  29 gataggattagaaataggttaaacttatcatttcctgttggtgcaccaaacaa 81  Q
    |||||||||| ||||||||| || ||||| |||  ||||||||||||||||||    
T  9028691 gataggattaaaaataggtttaaattatccttttatgttggtgcaccaaacaa 9028743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 139
Target Start/End: Complemental strand, 26543923 - 26543879
Alignment:
Q  95 gatatgataatctaatcatatcatgtctccttatcctgcgcacca 139  Q
    ||||||||||| | |||||||| ||||||| ||||||||||||||    
T  26543923 gatatgataattttatcatatcctgtctccctatcctgcgcacca 26543879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 29 - 139
Target Start/End: Original strand, 45792735 - 45792844
Alignment:
Q  29 gataggattagaaataggttaaacttatcatttcctgttggtgcaccaaacaatggattaagacatgatatgataatctaatcatatcatgtctccttat 128  Q
    |||||||||||||| | |||||||||||||||| |||||||||||||||| || ||||| || || |||| |||| ||||||||||||||||||||||||    
T  45792735 gataggattagaaacatgttaaacttatcattttctgttggtgcaccaaa-aacggattgagtcaggataggatattctaatcatatcatgtctccttat 45792833  T
Q  129 cctgcgcacca 139  Q
    ||||| |||||    
T  45792834 cctgcacacca 45792844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 29 - 139
Target Start/End: Complemental strand, 26793815 - 26793705
Alignment:
Q  29 gataggattagaaataggttaaacttatcatttcctgttggtgcaccaaacaatggattaagacatgatatgataatctaatcatatcatgtctccttat 128  Q
    |||||||||||||||| ||| || ||||| ||| || |||||||||||||||| ||||| |  || ||||||||| |   |||||||||||||| |||||    
T  26793815 gataggattagaaataagtttaagttatccttttctattggtgcaccaaacaacggattgaatcaggatatgatagttctatcatatcatgtcttcttat 26793716  T
Q  129 cctgcgcacca 139  Q
    | || ||||||    
T  26793715 catgtgcacca 26793705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 139
Target Start/End: Original strand, 12855317 - 12855402
Alignment:
Q  54 tatcatttcctgttggtgcaccaaacaatggattaagacatgatatgataatctaatcatatcatgtctccttatcctgcgcacca 139  Q
    |||| |||||| |||||||| ||||||||||||| | | | |||||||||||   |||||||| |||||||||||| || ||||||    
T  12855317 tatcctttcctattggtgcatcaaacaatggatttaaataggatatgataatgatatcatatcctgtctccttatcatgtgcacca 12855402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 9383284 - 9383342
Alignment:
Q  29 gataggattagaaataggttaaacttatcatttcctgttggtgcaccaaacaatggatt 87  Q
    |||| |||||||||| |||| || |||||  ||||| ||||||||||||||||||||||    
T  9383284 gataagattagaaattggtttaatttatccgttcctattggtgcaccaaacaatggatt 9383342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 139
Target Start/End: Complemental strand, 49236215 - 49236115
Alignment:
Q  39 gaaataggttaaacttatcatttcctgttggtgcaccaaacaatggattaagacatgatatgataatctaatcatatcatgtctccttatcctgcgcacc 138  Q
    |||||| ||| || ||||| ||| || ||||||||||||||||| ||||    || |||||||||||   |||||||| |||||  ||||||||||||||    
T  49236215 gaaatatgtttaatttatccttttctattggtgcaccaaacaatagatttcatcaggatatgataattgtatcatatcctgtctagttatcctgcgcacc 49236116  T
Q  139 a 139  Q
    |    
T  49236115 a 49236115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 35 - 139
Target Start/End: Complemental strand, 13039767 - 13039663
Alignment:
Q  35 attagaaataggttaaacttatcatttcctgttggtgcaccaaacaatggattaagacatgatatgataatctaatcatatcatgtctccttatcctgcg 134  Q
    |||||||||| ||||||||||||||||||| | || ||||||||||||||||||||||| |||| ||||  ||||||||||  |||||| ||||||||||    
T  13039767 attagaaatatgttaaacttatcatttcctatgggcgcaccaaacaatggattaagacaggataggatatactaatcatattttgtctctttatcctgcg 13039668  T
Q  135 cacca 139  Q
    |||||    
T  13039667 cacca 13039663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 29 - 139
Target Start/End: Complemental strand, 13109767 - 13109657
Alignment:
Q  29 gataggattagaaataggttaaacttatcatttcctgttggtgcaccaaacaatggattaagacatgatatgataatctaatcatatcatgtctccttat 128  Q
    |||| ||||||||||| |||||||||||||||| || | || ||||||||||||||||||||||| |||| ||||  ||||||||||  |||||| ||||    
T  13109767 gatatgattagaaatatgttaaacttatcattttctatgggcgcaccaaacaatggattaagacaggataggatatactaatcatattttgtctctttat 13109668  T
Q  129 cctgcgcacca 139  Q
    |||||||||||    
T  13109667 cctgcgcacca 13109657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 31 - 139
Target Start/End: Original strand, 13417063 - 13417170
Alignment:
Q  31 taggattagaaataggttaaacttatcatttcctgttggtgcaccaaacaatggattaagacatgatatgataatctaatcatatcatgtctccttatcc 130  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||   ||||| || || ||||| ||||| |||||||||||||| ||||||||     
T  13417063 taggattagaaataggttaaacttatctttttctgttggtgcaccaaac-gcggattgagtcaggatataataatttaatcatatcatgtatccttatca 13417161  T
Q  131 tgcgcacca 139  Q
    |||||||||    
T  13417162 tgcgcacca 13417170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 139
Target Start/End: Original strand, 16290799 - 16290885
Alignment:
Q  53 ttatcatttcctgttggtgcaccaaacaatggattaagacatgatatgataatctaatcatatcatgtctccttatcctgcgcacca 139  Q
    ||||| |||||| | || ||||||||||| ||||| | ||| |||| |||||| | |||||||| |||||| |||||||||||||||    
T  16290799 ttatcctttcctatgggagcaccaaacaaaggatttaaacaggataagataattttatcatatcctgtctctttatcctgcgcacca 16290885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 139
Target Start/End: Complemental strand, 34731327 - 34731217
Alignment:
Q  29 gataggattagaaataggttaaacttatcatttcctgttggtgcaccaaacaatggattaagacatgatatgataatctaatcatatcatgtctccttat 128  Q
    ||||||||||  |||||||| |  ||||| |||||| |||||||||||||||| ||||| | | | ||||||||| | | |||||||| | |||| ||||    
T  34731327 gataggattaacaataggtttagtttatcctttcctattggtgcaccaaacaagggatttaaataggatatgatagtgttatcatatcctatctctttat 34731228  T
Q  129 cctgcgcacca 139  Q
    | |||||||||    
T  34731227 catgcgcacca 34731217  T

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Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 29 - 139
Target Start/End: Complemental strand, 22202984 - 22202874
Alignment:
Q  29 gataggattagaaataggttaaacttatcatttcctgttggtgcaccaaacaatggattaagacatgatatgataatctaatcatatcatgtctccttat 128  Q
    |||||||||| ||||||||||||||||||||||| | | |  ||| ||||||| |||||  |||| |||| |||| ||| |||||||| |||||||||||    
T  22202984 gataggattaaaaataggttaaacttatcatttcatatggtcgcaacaaacaacggattgggacacgataggatattctgatcatatcctgtctccttat 22202885  T
Q  129 cctgcgcacca 139  Q
    |||||||||||    
T  22202884 cctgcgcacca 22202874  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 24 - 129
Target Start/End: Complemental strand, 35320688 - 35320583
Alignment:
Q  24 agtgagataggattagaaataggttaaacttatcatttcctgttggtgcaccaaacaatggattaagacatgatatgataatctaatcatatcatgtctc 123  Q
    ||||||||||||||| |||||||||||||||||| |||| ||||| |||| |||||||   |||||| ||||||  |||| | |||||||||  ||||||    
T  35320688 agtgagataggattaaaaataggttaaacttatcctttcatgttgctgcagcaaacaacttattaagccatgatgagatattttaatcatatattgtctc 35320589  T
Q  124 cttatc 129  Q
    ||||||    
T  35320588 cttatc 35320583  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 26183712 - 26183660
Alignment:
Q  29 gataggattagaaataggttaaacttatcatttcctgttggtgcaccaaacaa 81  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  26183712 gataggattagaaatatgttaaacttatcatttcctgttggtgcatcaaacaa 26183660  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 123
Target Start/End: Original strand, 19181470 - 19181564
Alignment:
Q  29 gataggattagaaataggttaaacttatcatttcctgttggtgcaccaaacaatggattaagacatgatatgataatctaatcatatcatgtctc 123  Q
    |||||||||||||||||||| || ||||||| || ||||||||||||||||||| ||||    || |||| |||||| | |||||||||||||||    
T  19181470 gataggattagaaataggtttaatttatcatatcatgttggtgcaccaaacaatagattggatcaggataggataattttatcatatcatgtctc 19181564  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 95 - 139
Target Start/End: Original strand, 26635551 - 26635595
Alignment:
Q  95 gatatgataatctaatcatatcatgtctccttatcctgcgcacca 139  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  26635551 gatatgataatctaatcatatcatgtctccttatcatgcgcacca 26635595  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 26635305 - 26635391
Alignment:
Q  16 aaaggagaagtgagataggattagaaataggttaaacttatcatttcctgttggtgcaccaaacaatggattaagacatgatatgat 102  Q
    ||||||| |||  ||||| ||| ||||||||||||| ||||||| || ||||||||||||||| || ||||| || || ||||||||    
T  26635305 aaaggaggagtaggatagaattggaaataggttaaatttatcatatcatgttggtgcaccaaaaaacggattgagtcaggatatgat 26635391  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 123
Target Start/End: Original strand, 55945709 - 55945803
Alignment:
Q  29 gataggattagaaataggttaaacttatcatttcctgttggtgcaccaaacaatggattaagacatgatatgataatctaatcatatcatgtctc 123  Q
    ||||||||||||||||| ||  | ||||| |||||| |||||||||||||||| ||||| ||  | | || |||| | |||||||||||||||||    
T  55945709 gataggattagaaatagattggatttatcctttcctattggtgcaccaaacaacggattgaggaagggtaggatattttaatcatatcatgtctc 55945803  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 78
Target Start/End: Complemental strand, 44126062 - 44126013
Alignment:
Q  29 gataggattagaaataggttaaacttatcatttcctgttggtgcaccaaa 78  Q
    |||||||||||||||| ||| || |||||||||||| ||| |||||||||    
T  44126062 gataggattagaaataagtttaatttatcatttcctattgctgcaccaaa 44126013  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 45413827 - 45413879
Alignment:
Q  29 gataggattagaaataggttaaacttatcatttcctgttggtgcaccaaacaa 81  Q
    ||||||||  |||||||||| || ||||| |||||| ||||||||||||||||    
T  45413827 gataggataggaaataggtttaatttatcctttcctattggtgcaccaaacaa 45413879  T

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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 131
Target Start/End: Original strand, 48936344 - 48936458
Alignment:
Q  15 caaaggagaagtgagataggattagaaataggttaaacttatcatttcctgttggtgcaccaaacaatggattaagacatgatatgataatctaatcata 114  Q
    ||||||||||||  |||||||||| ||| ||||| || |||||  |||||||||||||||||||||| ||||| | ||| ||||||||| ||| ||||||    
T  48936344 caaaggagaagtaggataggattaaaaacaggtttaaattatc--ttcctgttggtgcaccaaacaacggattgaaacaggatatgatagtcttatcata 48936441  T
Q  115 tcatgtctccttatcct 131  Q
    || ||||| | ||||||    
T  48936442 tcctgtcttcctatcct 48936458  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 7038662 - 7038555
Alignment:
Q  29 gataggattagaaataggttaaacttatcatttcctgttggtgcaccaaacaatggattaagacatgatatgataatctaatcatatcatgtctccttat 128  Q
    ||||||||||| |||||||| || ||||||| |||| || ||| |||||| |||||||| | | | |||| |||||| | ||||||||| |||||  |||    
T  7038662 gataggattagtaataggtttaatttatcatatcctattagtgtaccaaataatggatttaaataggataagataattttatcatatcaggtctctctat 7038563  T
Q  129 cctgcgca 136  Q
    | ||||||    
T  7038562 catgcgca 7038555  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 139
Target Start/End: Complemental strand, 32490937 - 32490851
Alignment:
Q  53 ttatcatttcctgttggtgcaccaaacaatggattaagacatgatatgataatctaatcatatcatgtctccttatcctgcgcacca 139  Q
    ||||| |||| | |||||||||||||||| ||||| | | |  |||||||| | | |||||||| |||||| |||||||||||||||    
T  32490937 ttatcctttcatattggtgcaccaaacaaaggatttaaatagaatatgatagtgttatcatatcctgtctctttatcctgcgcacca 32490851  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 66
Target Start/End: Original strand, 2565882 - 2565924
Alignment:
Q  24 agtgagataggattagaaataggttaaacttatcatttcctgt 66  Q
    ||||||||| ||||||||||| |||||||||||||||| ||||    
T  2565882 agtgagatatgattagaaatatgttaaacttatcattttctgt 2565924  T

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