View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15284_low_16 (Length: 313)

Name: NF15284_low_16
Description: NF15284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15284_low_16
NF15284_low_16
[»] chr4 (2 HSPs)
chr4 (1-294)||(48024781-48025074)
chr4 (15-293)||(48020009-48020284)
[»] scaffold0182 (1 HSPs)
scaffold0182 (1-290)||(13555-13841)
[»] chr1 (1 HSPs)
chr1 (1-290)||(51934385-51934671)


Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 48024781 - 48025074
Alignment:
Q  1 catcaacacaaccacttcttcgacgacgccgactctgaactctcttctcgtcgagccacacttcgttcacgattctacaatgatgatgaacggtttgtcg 100  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||  |||||||| |||||||||||||||| |||||    
T  48024781 catcaacacaaccacttcttcgacggcgccgcctctgaactctcttctcgtcgagccacacttcgtttccgattctataatgatgatgaacggtgtgtcg 48024880  T
Q  101 tttcacttaaagcaaaaggggttctagtcaacggcgtgcgtcgtgtagaggaagacgaggaagatttggacccgaagattggtcgagattgcgttgatga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  48024881 tttcacttaaagcaaaaggggttctagtcaacggcgtgcgtcgtgtagaggaagacgaggaagatttggatccgaagattggtcgagattgcgttgatga 48024980  T
Q  201 accggggaagttgttgggttttgtggattcgaggattatggggagagtgaaggaggaatttggcgtggttggtaaaaatgggtttgtgggttta 294  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  48024981 accggggaagttgttgggttttgtggattccaggattatggggagagtgaaggaggaatttggggtggttggtaaaaatgggtttgtgggttta 48025074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 15 - 293
Target Start/End: Original strand, 48020009 - 48020284
Alignment:
Q  15 cttcttcgacgacgccgactctgaactctcttctcgtcgagccacacttcgttcacgattctacaatgatgatgaacggtttgtcgtttcacttaaagca 114  Q
    ||||||||||| ||| |  || ||||||||||||||||| || |  |||||   ||||||||||  ||| |||||||||| ||| |||||  | ||||||    
T  48020009 cttcttcgacggcgctggatcggaactctcttctcgtcgcgctattcttcggctacgattctacggtgacgatgaacggtgtgttgtttcgttgaaagca 48020108  T
Q  115 aaaggggttctagtcaacggcgtgcgtcgtgtagaggaagacgaggaagatttggacccgaagattggtcgagattgcgttgatgaaccggggaagttgt 214  Q
    || | |||||| ||  | || ||| ||||||| || ||||| ||||| |||||||| |||||||||||||||||||| |||||||||||||||||    |    
T  48020109 aaggcggttctggttgatggtgtgagtcgtgttgaagaagatgaggaggatttggatccgaagattggtcgagattgtgttgatgaaccggggaa---at 48020205  T
Q  215 tgggttttgtggattcgaggattatggggagagtgaaggaggaatttggcgtggttggtaaaaatgggtttgtgggttt 293  Q
    |||| || ||||| ||||||||||||||||| ||||||||||||||||| ||||| ||| |||||||||||||||||||    
T  48020206 tggggttggtggagtcgaggattatggggagggtgaaggaggaatttggggtggtgggtgaaaatgggtttgtgggttt 48020284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 13555 - 13841
Alignment:
Q  1 catcaacacaaccacttcttcgacgacgccgactctgaactctcttctcgtcgagccacacttcgttcacgattctacaatgatgatgaacggtttgtcg 100  Q
    ||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||| |||||    
T  13555 catcaacacaaccacttcttcgacggcgccgcctccgaactctcttctcgtcgagccacatttcgttttcgattctacaatgatgatgaacggtgtgtcg 13654  T
Q  101 tttcacttaaagcaaaaggggttctagtcaacggcgtgcgtcgtgtagaggaagacgaggaagatttggacccgaagattggtcgagattgcgttgatga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  13655 tttcacttaaagcaaaaggggttctagtcaacggcgtgcgtcgtgtagaggaagacgaggaagatttggatccgaagattggtcgagattccgttgatga 13754  T
Q  201 accggggaagttgttgggttttgtggattcgaggattatggggagagtgaaggaggaatttggcgtggttggtaaaaatgggtttgtggg 290  Q
    || ||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  13755 actggggaa---gttgggttttgtggattcgaggattatggggagagtgaaggaggaatttggggtggtgggtaaaaatgggtttgtggg 13841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 51934385 - 51934671
Alignment:
Q  1 catcaacacaaccacttcttcgacgacgccgactctgaactctcttctcgtcgagccacacttcgttcacgattctacaatgatgatgaacggtttgtcg 100  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||   ||||||| |||||||||||||||| |||||    
T  51934385 catcaacacaaccacttcttcgacggcgccgcctctgaactctcttctcgtcgagccacatttcgtttttgattctataatgatgatgaacggtgtgtcg 51934484  T
Q  101 tttcacttaaagcaaaaggggttctagtcaacggcgtgcgtcgtgtagaggaagacgaggaagatttggacccgaagattggtcgagattgcgttgatga 200  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  51934485 tttcacttaaagcaaaaggggttctagtcaacggcgtgcgttgtgtagaggaagacgaggaagatttggatccgaagattggtcgagattccgttgatga 51934584  T
Q  201 accggggaagttgttgggttttgtggattcgaggattatggggagagtgaaggaggaatttggcgtggttggtaaaaatgggtttgtggg 290  Q
    ||| |||||   ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  51934585 accagggaa---gttgggttttgtggattcgaggattatggggagagtgaaggaggaatttggggtggtgggtaaaaatgggtttgtggg 51934671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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