View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15284_low_3 (Length: 573)

Name: NF15284_low_3
Description: NF15284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15284_low_3
NF15284_low_3
[»] chr5 (6 HSPs)
chr5 (272-558)||(39628561-39628840)
chr5 (3-245)||(39620805-39621047)
chr5 (272-396)||(39621317-39621441)
chr5 (2-161)||(39580993-39581156)
chr5 (398-507)||(39622105-39622214)
chr5 (514-558)||(26791265-26791309)
[»] chr3 (5 HSPs)
chr3 (516-558)||(51973388-51973430)
chr3 (516-558)||(37927225-37927268)
chr3 (516-558)||(37302554-37302596)
chr3 (516-558)||(50294021-50294063)
chr3 (514-555)||(11173585-11173626)
[»] chr4 (3 HSPs)
chr4 (184-229)||(7828487-7828532)
chr4 (198-229)||(7754321-7754352)
chr4 (198-229)||(7837837-7837868)
[»] chr2 (3 HSPs)
chr2 (516-558)||(2464269-2464311)
chr2 (514-558)||(28679322-28679367)
chr2 (514-558)||(29880037-29880081)
[»] chr8 (2 HSPs)
chr8 (516-558)||(13971133-13971175)
chr8 (524-556)||(11180477-11180509)
[»] chr1 (1 HSPs)
chr1 (517-558)||(29147893-29147935)
[»] chr7 (3 HSPs)
chr7 (516-556)||(8792497-8792537)
chr7 (516-556)||(12142018-12142058)
chr7 (516-552)||(39137161-39137197)


Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 272 - 558
Target Start/End: Original strand, 39628561 - 39628840
Alignment:
Q  272 tttgagaagatgaatcgcctcagaattctcattgttcgaaatacaacattttcatcagagcctaaacatctgccaaatcagttaaggctgcttgagtggg 371  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39628561 tttgagaagatgaatcgcctcagaattctcattgttcgaaataaaacattttcatcagagcctaaacatctgccaaatcagttaaggctgcttgagtggg 39628660  T
Q  372 acgagtacccttcaaagtcttttccagatatcccttccgcaacaaatggccgttcaacattaaaaacattgcattttgaaaatagtggtttctcagatga 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |    
T  39628661 acgagtacccttcaaagtcttttccagatatcccttccgcaacaaatggccgttcaacattaaaaacattgcattttgaaaatagtggtttgtcagatca 39628760  T
Q  472 agttcttgccacaattctcatatcttttcttgaattgatatttaatattttaacatccatttggtacaacttttgtgacaactttct 558  Q
    |||||||||||||||||||||||||||||||||||||       |||||| ||||| ||||||||||||||||||||||||||||||    
T  39628761 agttcttgccacaattctcatatcttttcttgaattg-------atatttcaacattcatttggtacaacttttgtgacaactttct 39628840  T

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Target: chr5; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 3 - 245
Target Start/End: Original strand, 39620805 - 39621047
Alignment:
Q  3 attcaagaggtgctaaaagtaagctataatgtgttggggcgcaatgccaagaccgttttcctagatataacttgtttcttcaaaggggagagaatagaat 102  Q
    ||||||||||||||  |||||||||| |||||||||| || ||||||| |||  ||||||||||||||| | || |||||||||||||| ||| |||| |    
T  39620805 attcaagaggtgctccaagtaagctacaatgtgttggagcccaatgcccagagtgttttcctagatatagcatgcttcttcaaaggggatagagtagatt 39620904  T
Q  103 atgttgaagagatactgggtgaattcagtgcagtatctaatattgaagaacttgttaatagatctcttttaatagttaaacatggctgcttggatatgca 202  Q
    |||||||||||||||| | ||| |||  ||||||| ||  |||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||    
T  39620905 atgttgaagagatacttgatgacttcgctgcagtaactggtattgaagaacttgttaataaatctctcttaatagttaaagatggctgcttggatatgca 39621004  T
Q  203 tgatctaatacaagacatgggtagagatatcgtcaagcaagag 245  Q
    ||||||||||||||| ||||| |||||||| ||||||||||||    
T  39621005 tgatctaatacaagagatgggcagagatattgtcaagcaagag 39621047  T

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Target: chr5; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 272 - 396
Target Start/End: Original strand, 39621317 - 39621441
Alignment:
Q  272 tttgagaagatgaatcgcctcagaattctcattgttcgaaatacaacattttcatcagagcctaaacatctgccaaatcagttaaggctgcttgagtggg 371  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| || | ||||  |||||||| ||||    
T  39621317 tttgagcagatgaattgcctcagaattctcattgttcgaaatacaacattttcatcggagcctaaacatctaccagataatttaactctgcttgattggg 39621416  T
Q  372 acgagtacccttcaaagtcttttcc 396  Q
    | ||||||||||||||||| |||||    
T  39621417 aggagtacccttcaaagtcatttcc 39621441  T

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Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 2 - 161
Target Start/End: Complemental strand, 39581156 - 39580993
Alignment:
Q  2 gattcaagaggtgctaaaagtaagctataatgtgttggggcgcaatgccaagaccgttttcctagatataacttgtttcttcaaaggggagagaatagaa 101  Q
    ||||||||| |||||||||||||||||| ||||||||  ||   ||||  |||  ||||||||||||||| |||| | |||||||||||  |||||||||    
T  39581156 gattcaagatgtgctaaaagtaagctatgatgtgttgcagccgtatgctcagagtgttttcctagatatagcttgctgcttcaaagggggaagaatagaa 39581057  T
Q  102 tatgttgaagagata----ctgggtgaattcagtgcagtatctaatattgaagaacttgttaat 161  Q
    ||| |||||||||||    || | ||||||||| |||  ||||||||||||||| |||||||||    
T  39581056 tattttgaagagatactagcttgatgaattcagcgcaacatctaatattgaagagcttgttaat 39580993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 398 - 507
Target Start/End: Original strand, 39622105 - 39622214
Alignment:
Q  398 gatatcccttccgcaacaaatggccgttcaacattaaaaacattgcattttgaaaatagtggtttctcagatgaagttcttgccacaattctcatatctt 497  Q
    ||||||||||| ||| | ||||| ||||||||||||||| |||||||||||| |||||||||||| || ||||||| ||||    ||||||| || ||||    
T  39622105 gatatcccttcagcagccaatggtcgttcaacattaaaagcattgcattttggaaatagtggtttgtctgatgaagatcttaaggcaattcttatctctt 39622204  T
Q  498 ttcttgaatt 507  Q
    ||||||||||    
T  39622205 ttcttgaatt 39622214  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 514 - 558
Target Start/End: Complemental strand, 26791309 - 26791265
Alignment:
Q  514 taatattttaacatccatttggtacaacttttgtgacaactttct 558  Q
    |||||||| |||| ||||||  |||||||||||||||||||||||    
T  26791309 taatatttgaacaaccattttttacaacttttgtgacaactttct 26791265  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 516 - 558
Target Start/End: Complemental strand, 51973430 - 51973388
Alignment:
Q  516 atattttaacatccatttggtacaacttttgtgacaactttct 558  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  51973430 atatttgaacatccatttggtacaacttttgtgacaactttct 51973388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 516 - 558
Target Start/End: Complemental strand, 37927268 - 37927225
Alignment:
Q  516 atattttaacatccatttggt-acaacttttgtgacaactttct 558  Q
    |||||| |||||||||||||| ||||||||||||||||||||||    
T  37927268 atatttgaacatccatttggtgacaacttttgtgacaactttct 37927225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 516 - 558
Target Start/End: Original strand, 37302554 - 37302596
Alignment:
Q  516 atattttaacatccatttggtacaacttttgtgacaactttct 558  Q
    ||||||||||| ||||||  |||||||||||||||||||||||    
T  37302554 atattttaacaaccattttttacaacttttgtgacaactttct 37302596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 516 - 558
Target Start/End: Original strand, 50294021 - 50294063
Alignment:
Q  516 atattttaacatccatttggtacaacttttgtgacaactttct 558  Q
    ||||||||||| |||||||||||||||| | ||||||||||||    
T  50294021 atattttaacaaccatttggtacaacttatttgacaactttct 50294063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 555
Target Start/End: Complemental strand, 11173626 - 11173585
Alignment:
Q  514 taatattttaacatccatttggtacaacttttgtgacaactt 555  Q
    |||||||| |||| ||||||| ||||||||||||||||||||    
T  11173626 taatatttgaacaaccatttgatacaacttttgtgacaactt 11173585  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 7828487 - 7828532
Alignment:
Q  184 atggctgcttggatatgcatgatctaatacaagacatgggtagaga 229  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||    
T  7828487 atggctgcttggagatgcatgatctaatacaagatatgggtagaga 7828532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 229
Target Start/End: Complemental strand, 7754352 - 7754321
Alignment:
Q  198 atgcatgatctaatacaagacatgggtagaga 229  Q
    ||||||||||||||||||||||||||||||||    
T  7754352 atgcatgatctaatacaagacatgggtagaga 7754321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 229
Target Start/End: Complemental strand, 7837868 - 7837837
Alignment:
Q  198 atgcatgatctaatacaagacatgggtagaga 229  Q
    ||||||||||||||||||||||||||||||||    
T  7837868 atgcatgatctaatacaagacatgggtagaga 7837837  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 516 - 558
Target Start/End: Complemental strand, 2464311 - 2464269
Alignment:
Q  516 atattttaacatccatttggtacaacttttgtgacaactttct 558  Q
    |||||| |||||||||||| |||||||||||||||||||||||    
T  2464311 atatttgaacatccatttgatacaacttttgtgacaactttct 2464269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 558
Target Start/End: Original strand, 28679322 - 28679367
Alignment:
Q  514 taatattttaacatccatttggt-acaacttttgtgacaactttct 558  Q
    |||||||| |||||||||||||| |||||||||| |||||||||||    
T  28679322 taatatttgaacatccatttggtgacaacttttgcgacaactttct 28679367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 514 - 558
Target Start/End: Original strand, 29880037 - 29880081
Alignment:
Q  514 taatattttaacatccatttggtacaacttttgtgacaactttct 558  Q
    |||||||| ||| | ||||||||||||||| ||||||||||||||    
T  29880037 taatatttgaacgttcatttggtacaacttatgtgacaactttct 29880081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 516 - 558
Target Start/End: Original strand, 13971133 - 13971175
Alignment:
Q  516 atattttaacatccatttggtacaacttttgtgacaactttct 558  Q
    |||||| |||||||||||  |||||||||||||||||||||||    
T  13971133 atatttgaacatccatttcatacaacttttgtgacaactttct 13971175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 524 - 556
Target Start/End: Complemental strand, 11180509 - 11180477
Alignment:
Q  524 acatccatttggtacaacttttgtgacaacttt 556  Q
    ||||||||||||||||||||| |||||||||||    
T  11180509 acatccatttggtacaactttggtgacaacttt 11180477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 517 - 558
Target Start/End: Complemental strand, 29147935 - 29147893
Alignment:
Q  517 tattttaacatccatttggt-acaacttttgtgacaactttct 558  Q
    ||||| |||||||||||||| ||||||||||||||||||||||    
T  29147935 tatttaaacatccatttggtgacaacttttgtgacaactttct 29147893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 516 - 556
Target Start/End: Original strand, 8792497 - 8792537
Alignment:
Q  516 atattttaacatccatttggtacaacttttgtgacaacttt 556  Q
    |||||| |||| ||||||| |||||||||||||||||||||    
T  8792497 atatttgaacaaccatttgatacaacttttgtgacaacttt 8792537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 516 - 556
Target Start/End: Complemental strand, 12142058 - 12142018
Alignment:
Q  516 atattttaacatccatttggtacaacttttgtgacaacttt 556  Q
    |||||| |||| ||||||| |||||||||||||||||||||    
T  12142058 atatttgaacaaccatttgatacaacttttgtgacaacttt 12142018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 516 - 552
Target Start/End: Original strand, 39137161 - 39137197
Alignment:
Q  516 atattttaacatccatttggtacaacttttgtgacaa 552  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  39137161 atatttgaacatccatttggtacaacttttatgacaa 39137197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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