View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15284_low_6 (Length: 424)
Name: NF15284_low_6
Description: NF15284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15284_low_6 |
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| [»] chr1 (5 HSPs) |
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| [»] scaffold0341 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Complemental strand, 6517242 - 6516819
Alignment:
| Q |
1 |
caagccgttcaatatttggtctctatgacattggaccttattatgaagcatggagtttgaacacggcgataaatgaagatgaatttgataaagtgcggaa |
100 |
Q |
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|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
6517242 |
caagccgttcaatatttggtctctatgacactagaccttattatgaagcatggagtttgaagacggcgataaatgaagatgaatttgataaagtgcggaa |
6517143 |
T |
|
| Q |
101 |
aaatttgttgtattatttaagaaatagagctgcatcaagggacagtggccttaaatatgctgtaggaagtgatgaggttggtccaaataataatcaaacc |
200 |
Q |
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|||||||||| || ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6517142 |
aaatttgttggataatttaagaaatagagctgcatcaggggacagtgaccttaaatatgctgtaggaagtgatgaggttggtccaaataataatcaaacc |
6517043 |
T |
|
| Q |
201 |
atatatggtctagctcaatgcacacctgatttgtctaaaacattttgtgatgattgtttggttcaatctatcaatgaaatcgcaatatgttgtaacaaca |
300 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6517042 |
atatatggtctagctcaatgcacacctgatttgtttaaaacattttgtgatgattgtttggttcaatctatcaatgaaatcgcaatatgttgtaacaaca |
6516943 |
T |
|
| Q |
301 |
ggatgggtgctagagttgttagacccagttgttatttgagatatgaacccgattcactcttttatcaaccaacacaagattcaccttcgtcgttgtcacc |
400 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6516942 |
ggatgagtgctagagttgttagacccagttgttatttgagatatgaaaccgattcactcttttatcaaccaacacaagattcaccttcgtcgttgtcacc |
6516843 |
T |
|
| Q |
401 |
atcaccgacgtcagtcccatcact |
424 |
Q |
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|||||||||||||||||||||||| |
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| T |
6516842 |
atcaccgacgtcagtcccatcact |
6516819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 5 - 385
Target Start/End: Complemental strand, 6512839 - 6512459
Alignment:
| Q |
5 |
ccgttcaatatttggtctctatgacattggaccttattatgaagcatggagtttgaacacggcgataaatgaagatgaatttgataaagtgcggaaaaat |
104 |
Q |
| |
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|||||||||||| ||||| |||| | | |||||| |||| || |||||||||||||| || | |||||||||||||||||||||||| | ||||||| |
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| T |
6512839 |
ccgttcaatattcggtctgaatgaaactagacctttttatttaggatggagtttgaacaatgctacaaatgaagatgaatttgataaagtactgaaaaat |
6512740 |
T |
|
| Q |
105 |
ttgttgtattatttaagaaatagagctgcatcaagggacagtggccttaaatatgctgtaggaagtgatgaggttggtccaaataataatcaaaccatat |
204 |
Q |
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|| ||| || ||||||||||||||||| ||||| | || |||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||| |
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| T |
6512739 |
ttattggataatttaagaaatagagcttcatcaggtgatagtgaccttaaatatgctgttggaagtgatgaggttggtcaaaataataatcaaactatat |
6512640 |
T |
|
| Q |
205 |
atggtctagctcaatgcacacctgatttgtctaaaacattttgtgatgattgtttggttcaatctatcaatgaaatcgcaatatgttgtaacaacaggat |
304 |
Q |
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||| ||| | ||||||||||||||||||||||||| |||| || |||||||||||||| |||||||||| | |||| ||| |||||||||||||||| | |
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| T |
6512639 |
atgctcttgttcaatgcacacctgatttgtctaaatcattgtgcgatgattgtttggtaaaatctatcaaagcaatcccaagatgttgtaacaacaggtt |
6512540 |
T |
|
| Q |
305 |
gggtgctagagttgttagacccagttgttatttgagatatgaacccgattcactcttttatcaaccaacacaagattcacc |
385 |
Q |
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| T |
6512539 |
gggtgctagaattgttagaccaagttgttatttgagatatgaaaccgattcactcttctatcaacaaacaccagatccacc |
6512459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 116 - 373
Target Start/End: Original strand, 6521908 - 6522165
Alignment:
| Q |
116 |
tttaagaaatagagctgcatcaagggacagtggccttaaatatgctgtaggaagtgatgaggttggtccaaataataatcaaaccatatatggtctagct |
215 |
Q |
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|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| | | |
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| T |
6521908 |
tttaagaaatagagctgcatcaggggacagtgaccttaaatatgctgtaggaagtgatgaggttggtccaagtaataaccaaaccatatatggtcttgtt |
6522007 |
T |
|
| Q |
216 |
caatgcacacctgatttgtctaaaacattttgtgatgattgtttggttcaatctatcaatgaaatcgcaatatgttgtaacaacaggatgggtgctagag |
315 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||| ||||||||||| ||| | ||||||||| |
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| T |
6522008 |
caatgcacacctgatttgtctaaaacattatgtgatgattgtttggttcaatctatcaaagaaatttcaaattgttgtaacaataggttaggtgctagaa |
6522107 |
T |
|
| Q |
316 |
ttgttagacccagttgttatttgagatatgaacccgattcactcttttatcaaccaac |
373 |
Q |
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||||||||||||||||| |||||||||||||| || ||||| |||| ||||||||||| |
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| T |
6522108 |
ttgttagacccagttgtaatttgagatatgaaaccaattcattcttctatcaaccaac |
6522165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 75 - 406
Target Start/End: Complemental strand, 6506862 - 6506525
Alignment:
| Q |
75 |
gaagatgaatttgataaagtgcggaaaaatttgttgtattatttaagaaatagagctgcatcaagggacagtggccttaaatatgctgtaggaagtgatg |
174 |
Q |
| |
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||||||||||||||||||| || |||||||||||||||| |||||| |||| ||||||||| |||| |||| |||||||||||||||||||||||||| |
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| T |
6506862 |
gaagatgaatttgataaagggctgaaaaatttgttgtataatttaaaaaatttagctgcatcgggggaaagtgaccttaaatatgctgtaggaagtgatg |
6506763 |
T |
|
| Q |
175 |
aggttggtccaaataataatcaaaccatatatggtctagctcaatgcacacctgatttgtctaaaacattttgtgatgattgtttggttcaatctatcaa |
274 |
Q |
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| ||||||||||||||||||||||||||| || ||| | |||||||||||||||||||||| ||||||| |||||||| ||||||| | |||||||||| |
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| T |
6506762 |
tgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaa |
6506663 |
T |
|
| Q |
275 |
tgaaatcgcaatatgttgtaacaaca------ggatgggtgctagagttgttagacccagttgttatttgagatatgaacccgattcactcttttatcaa |
368 |
Q |
| |
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|||||| ||| |||||| |||| | | || |||| |||| || ||||||||||||||||||||||||||||| || ||||||| || |||||| |
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| T |
6506662 |
agaaatcccaaattgttgtgacaatagaataggtataggtggtagatttcttagacccagttgttatttgagatatgaaaccaattcacttttctatcaa |
6506563 |
T |
|
| Q |
369 |
ccaacacaagattcaccttcgtcgttgtcaccatcacc |
406 |
Q |
| |
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| ||| |||||||||||||| || | |||| ||||||| |
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| T |
6506562 |
caaactcaagattcaccttcatcatcgtcatcatcacc |
6506525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 235
Target Start/End: Complemental strand, 47759955 - 47759914
Alignment:
| Q |
194 |
tcaaaccatatatggtctagctcaatgcacacctgatttgtc |
235 |
Q |
| |
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| T |
47759955 |
tcaaaccatatatggtcttgttcagtgcacacctgatttgtc |
47759914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 75 - 406
Target Start/End: Complemental strand, 887 - 550
Alignment:
| Q |
75 |
gaagatgaatttgataaagtgcggaaaaatttgttgtattatttaagaaatagagctgcatcaagggacagtggccttaaatatgctgtaggaagtgatg |
174 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||| |||||| |||| ||||||||| |||| |||| |||||||||||||||||||||||||| |
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| T |
887 |
gaagatgaatttgataaagggctgaaaaatttgttgtataatttaaaaaatttagctgcatcgggggaaagtgaccttaaatatgctgtaggaagtgatg |
788 |
T |
|
| Q |
175 |
aggttggtccaaataataatcaaaccatatatggtctagctcaatgcacacctgatttgtctaaaacattttgtgatgattgtttggttcaatctatcaa |
274 |
Q |
| |
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| ||||||||||||||||||||||||||| || ||| | |||||||||||||||||||||| ||||||| |||||||| ||||||| | |||||||||| |
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|
| T |
787 |
tgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaa |
688 |
T |
|
| Q |
275 |
tgaaatcgcaatatgttgtaacaaca------ggatgggtgctagagttgttagacccagttgttatttgagatatgaacccgattcactcttttatcaa |
368 |
Q |
| |
|
|||||| ||| |||||| |||| | | || |||| |||| || ||||||||||||||||||||||||||||| || ||||||| || |||||| |
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| T |
687 |
agaaatcccaaattgttgtgacaatagaataggtataggtggtagatttcttagacccagttgttatttgagatatgaaaccaattcacttttctatcaa |
588 |
T |
|
| Q |
369 |
ccaacacaagattcaccttcgtcgttgtcaccatcacc |
406 |
Q |
| |
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| ||| |||||||||||||| || | |||| ||||||| |
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|
| T |
587 |
caaactcaagattcaccttcatcatcgtcatcatcacc |
550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 75 - 406
Target Start/End: Complemental strand, 8540 - 8203
Alignment:
| Q |
75 |
gaagatgaatttgataaagtgcggaaaaatttgttgtattatttaagaaatagagctgcatcaagggacagtggccttaaatatgctgtaggaagtgatg |
174 |
Q |
| |
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||||||||||||||||||| || |||||||||||||||| |||||| |||| ||||||||| |||| |||| |||||||||||||||||||||||||| |
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|
| T |
8540 |
gaagatgaatttgataaagggctgaaaaatttgttgtataatttaaaaaatttagctgcatcgggggaaagtgaccttaaatatgctgtaggaagtgatg |
8441 |
T |
|
| Q |
175 |
aggttggtccaaataataatcaaaccatatatggtctagctcaatgcacacctgatttgtctaaaacattttgtgatgattgtttggttcaatctatcaa |
274 |
Q |
| |
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| ||||||||||||||||||||||||||| || ||| | |||||||||||||||||||||| ||||||| |||||||| ||||||| | |||||||||| |
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| T |
8440 |
tgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaa |
8341 |
T |
|
| Q |
275 |
tgaaatcgcaatatgttgtaacaaca------ggatgggtgctagagttgttagacccagttgttatttgagatatgaacccgattcactcttttatcaa |
368 |
Q |
| |
|
|||||| ||| |||||| |||| | | || |||| |||| || ||||||||||||||||||||||||||||| || ||||||| || |||||| |
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| T |
8340 |
agaaatcccaaattgttgtgacaatagaataggtataggtggtagatttcttagacccagttgttatttgagatatgaaaccaattcacttttctatcaa |
8241 |
T |
|
| Q |
369 |
ccaacacaagattcaccttcgtcgttgtcaccatcacc |
406 |
Q |
| |
|
| ||| |||||||||||||| || | |||| ||||||| |
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|
| T |
8240 |
caaactcaagattcaccttcatcatcgtcatcatcacc |
8203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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