View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15284_low_8 (Length: 418)
Name: NF15284_low_8
Description: NF15284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15284_low_8 |
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| [»] scaffold1476 (1 HSPs) |
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Alignment Details
Target: scaffold1476 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: scaffold1476
Description:
Target: scaffold1476; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 27 - 394
Target Start/End: Complemental strand, 1214 - 847
Alignment:
| Q |
27 |
taatagtaatatactggtcactatcgtggaatatattaaaattgcaaactcatgaacaaattttaatagattacaaatacaattatagcatttctgccta |
126 |
Q |
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| T |
1214 |
taatagtaatatactagtcactatcgtggaatatattaaaattgcaaactcatgaacaaattttaatagattacaaatacaattatagcatttctgccta |
1115 |
T |
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| Q |
127 |
ataatataagactaaaaattcaaacataaatgttatttttatttgtcattttgatccgcaaattgtttttaattagtaaaagtagtcttcaaatatgttt |
226 |
Q |
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| T |
1114 |
ataatataagattaaaaattcaaacataaatgttatttttatttgtcattttgatccgcaaattgtttttaattagtaaaagtagtcttcaaatatgttt |
1015 |
T |
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| Q |
227 |
tttatgatcaattttgtccaacatttactgacataaaaaaaagtagaaatatctgctatnnnnnnnnnttacgttagaaaaatgtttcgaaaggacagtg |
326 |
Q |
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| T |
1014 |
tttatgatcaattttgtccaacatttactgacataaaaaacagtagaaatatctgctataaaaaaaaattacgttagaaaaatgtttcgaaaggacagtg |
915 |
T |
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| Q |
327 |
ccaatacctcgcacattaggatcaaagtgaatttttctatagtctctaatttaattcaaatacatcta |
394 |
Q |
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| T |
914 |
ccaatacctcgcacattaggatcaaactgaatttttctatagtttctaatttaattgaaatacatcta |
847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 132 - 394
Target Start/End: Original strand, 22582556 - 22582818
Alignment:
| Q |
132 |
ataagactaaaaattcaaacataaatgttatttttatttgtcattttgatccgcaaattgtttttaattagtaaaagtagtcttcaaatatgttttttat |
231 |
Q |
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| T |
22582556 |
ataagattaaaaattcaaacataaatgttatttttatttgtcattttgatcctcaaattgtttttaattagtaaaagtagtcttcaaatatgttttttat |
22582655 |
T |
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| Q |
232 |
gatcaattttgtccaacatttactgacataaaaaaaagtagaaatatctgctatnnnnnnnnnttacgttagaaaaatgtttcgaaaggacagtgccaat |
331 |
Q |
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| T |
22582656 |
gatcaatttcgtccaacatttactaacataaaaaacagtagaaatatctgctataaaaaaaaattacgttagaaaaatgtttcgaaaggacagtgccaac |
22582755 |
T |
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| Q |
332 |
acctcgcacattaggatcaaagtgaatttttctatagtctctaatttaattcaaatacatcta |
394 |
Q |
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| T |
22582756 |
acctcgcacattaggatcaaactgaatttttctatagtttctaatttaattcaaatacatcta |
22582818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 153 - 278
Target Start/End: Original strand, 16984590 - 16984714
Alignment:
| Q |
153 |
taaatgttatttttatttgtcattttgatccgcaaattgtttttaattagtaaaagtagtcttcaaatatgtttttta-tgatcaattttgtccaacatt |
251 |
Q |
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||||||| ||||||||| |||||||||||| |||||||||||||| ||||||| |||||||| |||| ||||||| || ||||||| |||||||| | |
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| T |
16984590 |
taaatgtcatttttattagtcattttgatcttcaaattgtttttaaatagtaaatatagtcttcggatatcttttttagtgttcaatttcgtccaaca-t |
16984688 |
T |
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| Q |
252 |
tactgacataaaaaaaagtagaaatat |
278 |
Q |
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|||| |||| ||||| ||||||||||| |
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| T |
16984689 |
tactaacat-aaaaacagtagaaatat |
16984714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 132 - 198
Target Start/End: Original strand, 16794308 - 16794374
Alignment:
| Q |
132 |
ataagactaaaaattcaaacataaatgttatttttatttgtcattttgatccgcaaattgtttttaa |
198 |
Q |
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|||||| ||||||||||||||||||||| ||||||||| ||||||||||| ||||||||| |||| |
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| T |
16794308 |
ataagattaaaaattcaaacataaatgtcatttttattcatcattttgatcttcaaattgttcttaa |
16794374 |
T |
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