View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15285_high_6 (Length: 239)
Name: NF15285_high_6
Description: NF15285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15285_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 3 - 222
Target Start/End: Original strand, 40753595 - 40753816
Alignment:
| Q |
3 |
gaatcaaggccgaataagctaatatggattgtccatgtttgatacaaggctatcttatttgacacataagtgtttctccaatacagttgtccggatatgg |
102 |
Q |
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| T |
40753595 |
gaatcaaggccgaataagctaatatggattgtccatgtttgatccaaggctatcttatttaactcataagtgtttccccaagacagttgtccggatatgg |
40753694 |
T |
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| Q |
103 |
tttagacgggtttaaaatcctcactataaagattattgaagtacacacttttctactt--aaaaaacatcttttcagatacacaattttctactaaaaaa |
200 |
Q |
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|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
40753695 |
tttagacgggttaaaaaccctcactataaagattattgaagtacacacttttctacttaaaaaaaacatcttttcagatacacaattttctactaaaaaa |
40753794 |
T |
|
| Q |
201 |
cctcatttattattttgataca |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
40753795 |
cctcatttattattttgataca |
40753816 |
T |
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