View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15285_low_2 (Length: 451)
Name: NF15285_low_2
Description: NF15285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15285_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 12 - 407
Target Start/End: Original strand, 31649542 - 31649938
Alignment:
| Q |
12 |
tcatcatttttaataagataaatagatagaactacctttgagaccttactctcttcagttgttcctgatgcaagagcctcaagtactgttattcttgatt |
111 |
Q |
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| T |
31649542 |
tcatcatttttaataagataaatagatagaactacctttgagaccttactctcttcagttgttcctgatgcaagagcctcaagtactgttattcttgatt |
31649641 |
T |
|
| Q |
112 |
tatatttttcttcacgagtcttgaaaagattgttttgctgaagacaaagggtaagacagcaacnnnnnnnnn-caagaaaaacggacaaaactaagtctc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||| |
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| T |
31649642 |
tatatttttcttcacgagtcttgaaaagattgttttgctgaagacaaagggtaagacagcaacataaaaaaaacgagaaaaacggacaaaactaggtctc |
31649741 |
T |
|
| Q |
211 |
atttactttctaaaaacgatgtaatcgacatacagtttttaaatgctcttgttgtgtagatatacgccgctcaatctcttggacaacttttcttagcaag |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31649742 |
gtttactttctaaaaacgatgtaatcgacatacagtttttaaatgctcttgttgtgtagatatacgccgctcaatctcttggacaacttttcttagcaag |
31649841 |
T |
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| Q |
311 |
cacgccacacgctaagatgaaaagaaaattgtgttagataatatacaaaaacaaaacatgtagtttcatgaatgcatttatgatttatatacaaaag |
407 |
Q |
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| T |
31649842 |
cacgccacacgctaagatgaaaagaaaattttgttagataatatacaaaaacaaaacatgtactttcatgaatgcatttatgatttatatacaaaag |
31649938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 433
Target Start/End: Original strand, 31649943 - 31649975
Alignment:
| Q |
401 |
acaaaagcaaatcaagagtatttatcatacagg |
433 |
Q |
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| T |
31649943 |
acaaaagcaaatcaagagtatttatcatacagg |
31649975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 153
Target Start/End: Complemental strand, 43878891 - 43878792
Alignment:
| Q |
54 |
accttactctcttcagttgttcctgatgcaagagcctcaagtactgttattcttgatttatatttttcttcacgagtcttgaaaagattgttttgctgaa |
153 |
Q |
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|||| ||||||||| | ||||| |||||||| ||||| |||||| ||||||| || | |||||||||||| || | ||| |||||||| ||||||||| |
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| T |
43878891 |
acctcactctcttctctagttccagatgcaagtgcctcgagtactcttattctcgactgatatttttcttcccgggccttaaaaagattactttgctgaa |
43878792 |
T |
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