View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15285_low_4 (Length: 258)
Name: NF15285_low_4
Description: NF15285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15285_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 102; Significance: 9e-51; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 19301467 - 19301568
Alignment:
| Q |
18 |
tgcagaatttctccatctgaacagtagcagcagcattggagtgcacaaacctagttgttttcttgggattctctctaagaccataaataaggttaccatc |
117 |
Q |
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| T |
19301467 |
tgcagaatttctccatctgaacagtagcagcagcattggagtgcacaaacctagttgttttcttgggattctctctaagaccataaataaggttaccatc |
19301566 |
T |
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| Q |
118 |
at |
119 |
Q |
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| T |
19301567 |
at |
19301568 |
T |
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Target: chr5; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 152 - 235
Target Start/End: Original strand, 19301589 - 19301672
Alignment:
| Q |
152 |
ttagaccctaaatccaatctctttctctttcttccctcatcaaacttaaacatagcattaacactagcattagcattcattctt |
235 |
Q |
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| T |
19301589 |
ttagaccctaaatccaatctctttctctttcttccctcatcaaacttaaacatagcattaacactagcattagcattcattctt |
19301672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 32267047 - 32267099
Alignment:
| Q |
59 |
tgcacaaacctagttgttttcttgggattctctctaagaccataaataaggtt |
111 |
Q |
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| T |
32267047 |
tgcacaaacctcattgttttcttgggattttctcttagaccataaatgaggtt |
32267099 |
T |
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