View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15285_low_8 (Length: 237)
Name: NF15285_low_8
Description: NF15285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15285_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 3042145 - 3042367
Alignment:
| Q |
1 |
ccttaaccaatgccataagggagctcgatagcattttccaaaatatataaacaggatatgtgaatttcatgcagaaccatatacaataaggtatactttt |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3042145 |
ccttaaccaatgccataagggaactcgatagcattttccaaaatatataaacaggatatgtgaatttcatgcagaaccatatacaataagctatactttt |
3042244 |
T |
|
| Q |
101 |
cacttaatgtgtctgtttggtcccatttgtctagcttccaaacatccttttcagtgataggttttcggtagccttgtttcatgagtggagttatccatcc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3042245 |
cacttaatgtgtctgtttggtcccatttgtctagcttccaaacgtccttttcagtgataggttttcggtagccttgtttcatgagtggagttatccatcc |
3042344 |
T |
|
| Q |
201 |
aaaacttaatcctacacataatg |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
3042345 |
aaaacttaatcctacacataatg |
3042367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 91 - 223
Target Start/End: Original strand, 3014432 - 3014564
Alignment:
| Q |
91 |
gtatacttttcacttaatgtgtctgtttggtcccatttgtctagcttccaaacatccttttcagtgataggttttcggtagccttgtttcatgagtggag |
190 |
Q |
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||||||||||| |||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3014432 |
gtatacttttcgtttaacgtttctgtttggtcccatttgtcgagcttccaaacatccttttcagtgataggttttcgatagccttgtttcatgagtggag |
3014531 |
T |
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| Q |
191 |
ttatccatccaaaacttaatcctacacataatg |
223 |
Q |
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||||||||||| ||||||||||| ||||||||| |
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| T |
3014532 |
ttatccatccataacttaatccttcacataatg |
3014564 |
T |
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