View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15286_high_2 (Length: 458)
Name: NF15286_high_2
Description: NF15286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15286_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 146 - 444
Target Start/End: Original strand, 49520628 - 49520927
Alignment:
| Q |
146 |
ttcaagtacataacccttagagaaacataaagaatcatttgcaaaaccatttttctccaatgtaaatgtaacaccagtattagatagttgacaaacaaaa |
245 |
Q |
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| T |
49520628 |
ttcaagtacataaccatgagagaaacataaagaatcattagcgaaaccatttttctccaatgtaaatgtaacaccagtattagatagttgacaaacaaaa |
49520727 |
T |
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| Q |
246 |
ttaactatctcttggtttgttattcgaagtaagtttccatcataaattataatgaactgagaaataaactgattatatataacgtagaatggaaaataga |
345 |
Q |
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| T |
49520728 |
ttaactatctcttggtttgttattcgaaataagtttccatcataaattataatgaactgagaaataaactgattatatataacgtagaatggaaaataga |
49520827 |
T |
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| Q |
346 |
gaataccatagctattattgtctgcattacttggtgatgcatctcaacatatacctgagataataaaatgaagtaaacccagagttag-aaggtggaaaa |
444 |
Q |
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| T |
49520828 |
gaataccatagctattattgtctgcattacttggtgatgcatctcaacatatacctgagataataaaatgaagtaaacccagagttagaaaggtggaaaa |
49520927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 195 - 432
Target Start/End: Original strand, 49531648 - 49531887
Alignment:
| Q |
195 |
tttttctccaatgtaaatgtaacaccagtattagatagttgacaaacaaaattaactatctcttggtttgttattcgaagtaagtttccatcataaatta |
294 |
Q |
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| T |
49531648 |
tttttctccaatgcaaatgtaacaccagtattagatagttgacaaacggagctaactatctcttggtttgtcaatccaaacaagttcctatcaataatta |
49531747 |
T |
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| Q |
295 |
taatgaactgagaaataaactgattatatataacgtag-aatggaaaatagagaataccatagctattattgtctgcattacttggtgatgcatctcaac |
393 |
Q |
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| T |
49531748 |
taatgaactgagaaataaattgattataaataacatagaaatgggaaacatggaataccatagctaatattgcatccatcacttctctatgcatctcaac |
49531847 |
T |
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| Q |
394 |
atatacctgagat-aataaaatgaagtaaacccagagtta |
432 |
Q |
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| T |
49531848 |
atatacctgagttaaataaatcgaagtaaaaccaaagtta |
49531887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 189 - 265
Target Start/End: Original strand, 49529277 - 49529353
Alignment:
| Q |
189 |
aaaccatttttctccaatgtaaatgtaacaccagtattagatagttgacaaacaaaattaactatctcttggtttgt |
265 |
Q |
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| T |
49529277 |
aaaccatttttctccaatgcaaatttaacaccagtattagatagttgacaaacaaagttaactatctcttggtttgt |
49529353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 294 - 430
Target Start/End: Original strand, 49701562 - 49701700
Alignment:
| Q |
294 |
ataatgaactgagaaataaactgattatatataacgtagaa-tggaaaatagagaataccatagctattattgtctgcattacttggtgatgcatctcaa |
392 |
Q |
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| T |
49701562 |
ataatgaactgagaaataaattgtttataaataacataaaaatggaaaacagaaaataccattgctaatattgcatccattacttgtctatgcatctcat |
49701661 |
T |
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| Q |
393 |
catatacctgagat-aataaaatgaagtaaacccagagt |
430 |
Q |
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| T |
49701662 |
catatacctgagataaataaagtgaagtaatcccagagt |
49701700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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