View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15286_low_1 (Length: 558)
Name: NF15286_low_1
Description: NF15286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15286_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 149; Significance: 2e-78; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 30275513 - 30275321
Alignment:
| Q |
18 |
atatttgattgacaataatcaggccattgcagaagacatttctccattagttgaacttgaaatgg-aaatttagtcattagtggactcaagaatcccttt |
116 |
Q |
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| T |
30275513 |
atatttgattgacaataatcaggccattgcagaagacatttctccattagttgaacttgaaatgggaaatttagttattagcggactcaagaatctcttt |
30275414 |
T |
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| Q |
117 |
aatgagtatattatcatgcttgaaagagttctaacttatgaaacaagtgcaatggagcaagatagttctagattcaagttacctgagtcactt |
209 |
Q |
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| T |
30275413 |
aatgagtatattatcatacttgaaagagcccttacttatgaaacaagtgcaacggagcaagatagttctagaatcaagttacctgagtcactt |
30275321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 210 - 332
Target Start/End: Complemental strand, 30275284 - 30275162
Alignment:
| Q |
210 |
ttggtgcagtttctctctactatggtcaaagatatctttatcatgtattcacaattggtggagaaccactcagttggtcttaagcatcatgaacttgatg |
309 |
Q |
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| T |
30275284 |
ttggtgcagtttctctctaccatggtcaaagatatcttcagcatggattcacaattggtggagaaccactcagttggttttaagcatcatgaactcgatg |
30275185 |
T |
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| Q |
310 |
tttttctgatgtttattgaagag |
332 |
Q |
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| T |
30275184 |
tttttctgatgtttattgaagag |
30275162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 2e-47; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 18 - 144
Target Start/End: Complemental strand, 7778826 - 7778696
Alignment:
| Q |
18 |
atatttgattgacaataatcaggccattgcagaagacatttctccattagttgaacttgaaatggaaatttagtcattagtggactcaa-gaatccctt- |
115 |
Q |
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| T |
7778826 |
atatttgattgacaataatcaggccgttgcagaagacatttctccattagttgaacttgaaatggaaatttagtcattagtggactcaaggaatctcttt |
7778727 |
T |
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| Q |
116 |
--taatgagtatattatcatgcttgaaagag |
144 |
Q |
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| T |
7778726 |
aataatgagtatattatcatacttgaaagag |
7778696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 347 - 470
Target Start/End: Original strand, 37751787 - 37751914
Alignment:
| Q |
347 |
ggttatgacagtagtgcttttattttctatttctactactgtgacatgttcatgta-ttaatct------acagagaataggaaaatcttaaatgtagtt |
439 |
Q |
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| T |
37751787 |
ggttatgacagttgtgcttttattttctattt---ctcctgtgacatgttcatgtatttactctatcgagatggagattagggaaatcttaagtgtagtt |
37751883 |
T |
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| Q |
440 |
tcatgtggctaaccgataatatttttacgtg |
470 |
Q |
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| T |
37751884 |
ttatgtggctaaccattaatatttctacgtg |
37751914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 381
Target Start/End: Complemental strand, 7779525 - 7779491
Alignment:
| Q |
347 |
ggttatgacagtagtgcttttattttctatttcta |
381 |
Q |
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| T |
7779525 |
ggttatgacagtagtgcttttattttctatttcta |
7779491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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