View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15286_low_3 (Length: 388)
Name: NF15286_low_3
Description: NF15286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15286_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 6 - 367
Target Start/End: Original strand, 26723147 - 26723508
Alignment:
| Q |
6 |
agcagcagagaaccagtaaacgaacccaaccaattgaacgctaaaaactgccgcacagttgggctatttgtacaccacacccattccgaacagctgcagc |
105 |
Q |
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||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26723147 |
agcagcagaaaaccagtaaacgaacccaaccaactgaacgctaaaaactgccgcacagttgggctatttgtacaccacacccattccgaacagctgcaag |
26723246 |
T |
|
| Q |
106 |
caaaacacagatatgatttctaaacatattgccttaaaactgcagttttgaaagatctttaaatccacatcaaacttgcccattttggtacagtttacct |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26723247 |
caaaacacagatatgatttctaaacatattgccttaaaactgcagttttgaaagatctttaaatccacatcaaacttgcccattttggtacagtttacct |
26723346 |
T |
|
| Q |
206 |
ttacgaaggctggtgttcgaactttgttatgtgaattccggcgaagtcgaaagcacgtttgatttgttctgtgtcgggatttgagaaggttttggatgaa |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
26723347 |
ttacgaaggctggtgttcgaactttgttatgtgaattccggcgaagtcgaaagcacgtttgatttgttctatgtcgggatttgagaaggttttggatgaa |
26723446 |
T |
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| Q |
306 |
tgaagcttgtgtggaaccacaaatctgagttgttgtttcggtgattttttgttttggatttt |
367 |
Q |
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| T |
26723447 |
tgaagcttgtgtggaaccacaaatctgagttgttgtttcggtgatttattgttatgaatttt |
26723508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 98; Significance: 4e-48; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 6 - 135
Target Start/End: Original strand, 14512046 - 14512175
Alignment:
| Q |
6 |
agcagcagagaaccagtaaacgaacccaaccaattgaacgctaaaaactgccgcacagttgggctatttgtacaccacacccattccgaacagctgcagc |
105 |
Q |
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||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| | |
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| T |
14512046 |
agcagcagaaaaccagtaaacaaacccaaccaactgaacgctaaaaactgccgcacagttgggctgtttgtacaccacaccaattccgaacagctgcaac |
14512145 |
T |
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| Q |
106 |
caaaacacagatatgatttctaaacatatt |
135 |
Q |
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|||||||| |||||||||||||||||||| |
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| T |
14512146 |
caaaacacgaatatgatttctaaacatatt |
14512175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 297 - 358
Target Start/End: Original strand, 14512184 - 14512245
Alignment:
| Q |
297 |
ttggatgaatgaagcttgtgtggaaccacaaatctgagttgttgtttcggtgattttttgtt |
358 |
Q |
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| T |
14512184 |
ttggatgaatgaagcttgtgtggaaccacaaatctgagttgttgtttcggtgatttattgtt |
14512245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 10 - 135
Target Start/End: Complemental strand, 3597992 - 3597867
Alignment:
| Q |
10 |
gcagagaaccagtaaacgaacccaaccaattgaacgctaaaaactgccgcacagttgggctatttgtacaccacacccattccgaacagctgcagccaaa |
109 |
Q |
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||||| ||||||||||| ||||||| ||| |||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||| |
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| T |
3597992 |
gcagaaaaccagtaaacaaacccaatcaactgaaagctaaaaactgccgcacagttgggctgtttgtacaccacaccaattccgaacagctgcaaccaaa |
3597893 |
T |
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| Q |
110 |
acacagatatgatttctaaacatatt |
135 |
Q |
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|||| ||||||||||||||||||||| |
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| T |
3597892 |
acacggatatgatttctaaacatatt |
3597867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 297 - 358
Target Start/End: Complemental strand, 3597858 - 3597797
Alignment:
| Q |
297 |
ttggatgaatgaagcttgtgtggaaccacaaatctgagttgttgtttcggtgattttttgtt |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3597858 |
ttggatgaatgaagcttgtgtggaaccacaaatctgagttgttgtttcggtgatttattgtt |
3597797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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