View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15287_low_2 (Length: 418)

Name: NF15287_low_2
Description: NF15287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15287_low_2
NF15287_low_2
[»] chr2 (7 HSPs)
chr2 (169-417)||(38564418-38564664)
chr2 (188-247)||(38564014-38564073)
chr2 (175-249)||(22898040-22898114)
chr2 (192-238)||(18788256-18788302)
chr2 (169-247)||(27530196-27530274)
chr2 (173-247)||(16264138-16264214)
chr2 (169-229)||(44021769-44021830)
[»] chr6 (10 HSPs)
chr6 (7-150)||(11314094-11314237)
chr6 (169-247)||(11313985-11314063)
chr6 (169-247)||(16260783-16260861)
chr6 (172-230)||(11589343-11589401)
chr6 (174-247)||(16263986-16264059)
chr6 (169-232)||(11308270-11308333)
chr6 (169-247)||(16242170-16242248)
chr6 (177-232)||(6052511-6052566)
chr6 (169-214)||(607830-607875)
chr6 (191-232)||(6052319-6052360)
[»] chr1 (15 HSPs)
chr1 (169-252)||(10765758-10765841)
chr1 (174-240)||(38832845-38832911)
chr1 (169-232)||(5494117-5494180)
chr1 (180-252)||(3346665-3346737)
chr1 (174-231)||(3346044-3346101)
chr1 (173-232)||(39015485-39015544)
chr1 (169-232)||(5493273-5493336)
chr1 (174-247)||(12214989-12215062)
chr1 (173-229)||(18970593-18970646)
chr1 (193-233)||(5489598-5489638)
chr1 (169-232)||(18969946-18970009)
chr1 (177-232)||(35908906-35908961)
chr1 (203-232)||(5491495-5491524)
chr1 (176-220)||(13413790-13413834)
chr1 (174-246)||(14230448-14230520)
[»] chr5 (11 HSPs)
chr5 (177-248)||(19516606-19516677)
chr5 (169-247)||(34799970-34800048)
chr5 (169-251)||(19986845-19986927)
chr5 (175-252)||(2807991-2808068)
chr5 (169-247)||(20454505-20454585)
chr5 (210-247)||(19516171-19516208)
chr5 (172-216)||(3959690-3959734)
chr5 (175-238)||(17292620-17292682)
chr5 (185-247)||(30772764-30772826)
chr5 (175-248)||(17309247-17309319)
chr5 (174-251)||(3957302-3957378)
[»] chr8 (7 HSPs)
chr8 (174-251)||(24409222-24409299)
chr8 (169-229)||(38214630-38214690)
chr8 (187-232)||(5180933-5180978)
chr8 (193-232)||(41829473-41829512)
chr8 (193-231)||(29760894-29760932)
chr8 (176-227)||(5182235-5182286)
chr8 (173-232)||(18030390-18030451)
[»] chr3 (10 HSPs)
chr3 (169-246)||(43020030-43020107)
chr3 (174-247)||(43021622-43021695)
chr3 (169-247)||(37521851-37521928)
chr3 (197-250)||(9011842-9011895)
chr3 (177-248)||(8237740-8237811)
chr3 (169-251)||(24515997-24516079)
chr3 (171-229)||(36656886-36656944)
chr3 (186-248)||(42486318-42486380)
chr3 (169-228)||(8993660-8993719)
chr3 (169-225)||(44808356-44808411)
[»] chr4 (14 HSPs)
chr4 (174-232)||(30925380-30925438)
chr4 (174-232)||(30926000-30926058)
chr4 (173-247)||(35603173-35603247)
chr4 (169-247)||(5371034-5371114)
chr4 (174-250)||(19655641-19655717)
chr4 (174-233)||(49605908-49605967)
chr4 (169-225)||(2215684-2215740)
chr4 (201-256)||(46333843-46333897)
chr4 (169-247)||(24549936-24550014)
chr4 (174-251)||(49605304-49605381)
chr4 (177-252)||(56553702-56553776)
chr4 (174-232)||(2483826-2483884)
chr4 (169-233)||(35595928-35595991)
chr4 (169-249)||(51574008-51574087)
[»] chr7 (8 HSPs)
chr7 (177-247)||(7579328-7579398)
chr7 (174-232)||(43071712-43071770)
chr7 (169-216)||(11060137-11060184)
chr7 (169-240)||(24252318-24252389)
chr7 (172-226)||(3303524-3303578)
chr7 (169-251)||(23657837-23657918)
chr7 (205-247)||(41554589-41554631)
chr7 (202-247)||(7567778-7567823)
[»] scaffold0010 (2 HSPs)
scaffold0010 (186-229)||(157319-157362)
scaffold0010 (197-247)||(155337-155387)
[»] scaffold0006 (1 HSPs)
scaffold0006 (174-220)||(280324-280370)
[»] scaffold0486 (1 HSPs)
scaffold0486 (169-218)||(1519-1568)


Alignment Details
Target: chr2 (Bit Score: 184; Significance: 2e-99; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 169 - 417
Target Start/End: Complemental strand, 38564664 - 38564418
Alignment:
Q  169 ggggttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttagtttttactaaaaaaccatcttttttattccaaaa 268  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||| ||||||||||| ||||||||    
T  38564664 ggggatgctaacttacttccacctaaaaacatgaaggagtaagttagcaaggttactcccacttaatttttactaaaaa-ccatctttttttttccaaaa 38564566  T
Q  269 caactttaactaatgggtataattgtaattgacattgaatttcatttannnnnnnnaaataaacaaatcatctttcttgatgtttgccgacgtgagatca 368  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||| |||||||||||    
T  38564565 caactttaactaatgggtataattgtaattgacattgaatttcattta-tttttttaaataaacaaatcatctttcttgatgtttgcccacgtgagatca 38564467  T
Q  369 tctttttatctaattcgacaaagttcaacttatatcatcattttttgcc 417  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  38564466 tctttttatctagttcgacaaagttcaacttatatcatcattttttgcc 38564418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 188 - 247
Target Start/End: Original strand, 38564014 - 38564073
Alignment:
Q  188 cacctaaaaacatgaaggagtaagttagcaagcctactcccacttagtttttactaaaaa 247  Q
    |||| ||||||||||||||||||| || ||||||||||||||||| ||||||||||||||    
T  38564014 cacccaaaaacatgaaggagtaaggtaacaagcctactcccacttggtttttactaaaaa 38564073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 175 - 249
Target Start/End: Original strand, 22898040 - 22898114
Alignment:
Q  175 gctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttagtttttactaaaaaac 249  Q
    ||||| ||||| |||||||||||||||||||||||||||| |||||||||| ||||||  ||||  |||||||||    
T  22898040 gctaatttactcccacctaaaaacatgaaggagtaagttaacaagcctacttccacttgcttttctctaaaaaac 22898114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 18788302 - 18788256
Alignment:
Q  192 taaaaacatgaaggagtaagttagcaagcctactcccacttagtttt 238  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||    
T  18788302 taaaaacatgaaagagtaagttagcaagcctactcccacttactttt 18788256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 27530274 - 27530196
Alignment:
Q  169 ggggttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttagtttttactaaaaa 247  Q
    ||||||||||||||||| ||||| |||||||||||||||||| | ||||||  |||| ||||||   ||||||||||||    
T  27530274 ggggttgctaacttactcccacccaaaaacatgaaggagtaactgagcaaggttacttccacttgcattttactaaaaa 27530196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 173 - 247
Target Start/End: Complemental strand, 16264214 - 16264138
Alignment:
Q  173 ttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccact--tagtttttactaaaaa 247  Q
    ||||||||| | || |||||||||||| |||||||||||||| |||| |||||| ||||  || |||||||||||||    
T  16264214 ttgctaactaattttcacctaaaaacacgaaggagtaagttaacaagtctactctcacttatattttttactaaaaa 16264138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 169 - 229
Target Start/End: Complemental strand, 44021830 - 44021769
Alignment:
Q  169 ggggttgctaacttacttccacctaaaaacatgaaggagtaagttagc-aagcctactccca 229  Q
    |||| ||| |||||||  ||||||||||| |||||||||||||||||| |||||||||||||    
T  44021830 ggggctgccaacttacacccacctaaaaatatgaaggagtaagttagcaaagcctactccca 44021769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 124; Significance: 1e-63; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 7 - 150
Target Start/End: Complemental strand, 11314237 - 11314094
Alignment:
Q  7 gtacaaggtttcaaagactagtttgttcaaggtttcaaatgtccagtaaaaaatttatgcaaggaactaaattgggtcatgagcagtgaggaatcgaaat 106  Q
    ||||||||||||||||||||||||  || ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  11314237 gtacaaggtttcaaagactagttttgtcgaggtttcaaatgtccagtaaaatttttatgcaaggaactaaattgggtcatgagcagtgaggaatcgaaat 11314138  T
Q  107 gggacattattcattaatttattaatattacaagttagtatgta 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  11314137 gggacattattcattaatttattaatattacaagttagtatgta 11314094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 11314063 - 11313985
Alignment:
Q  169 ggggttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttagtttttactaaaaa 247  Q
    |||||||||||||||||  |||||||||| ||||| ||||||||||||||| ||||||||||||| |||||||||||||    
T  11314063 ggggttgctaacttactctcacctaaaaatatgaaagagtaagttagcaagtctactcccacttattttttactaaaaa 11313985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 169 - 247
Target Start/End: Original strand, 16260783 - 16260861
Alignment:
Q  169 ggggttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttagtttttactaaaaa 247  Q
    |||| |||||||||||| ||||| |||||||||||||||| ||||||||||| ||||||||||||  ||||||||||||    
T  16260783 ggggctgctaacttactcccacccaaaaacatgaaggagtgagttagcaagcatactcccacttaccttttactaaaaa 16260861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 11589401 - 11589343
Alignment:
Q  172 gttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccac 230  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  11589401 gttgttaacttactcccacctaaaaacatgaaggagtaagttagcaagcttactcccac 11589343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 16264059 - 16263986
Alignment:
Q  174 tgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttagtttttactaaaaa 247  Q
    |||||||||||| ||||| ||||||||||| |||||||||| |||||||||||||||||  |||| ||||||||    
T  16264059 tgctaacttactcccacccaaaaacatgaatgagtaagttatcaagcctactcccacttgtttttgactaaaaa 16263986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 11308270 - 11308333
Alignment:
Q  169 ggggttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccactt 232  Q
    ||||||||||||||||| |||| |||||||| ||||||||||||||||||  |||| |||||||    
T  11308270 ggggttgctaacttactcccacttaaaaacacgaaggagtaagttagcaaatctacccccactt 11308333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 16242248 - 16242170
Alignment:
Q  169 ggggttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttagtttttactaaaaa 247  Q
    |||| |||||||||||| ||||| ||||| || |||||  ||||||||||||||||||||||||  |||| ||||||||    
T  16242248 ggggctgctaacttactcccaccaaaaaatataaaggataaagttagcaagcctactcccacttccttttgactaaaaa 16242170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 177 - 232
Target Start/End: Complemental strand, 6052566 - 6052511
Alignment:
Q  177 taacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccactt 232  Q
    |||||||||  |||| |||| |||||| |||||||||||||||||||||| |||||    
T  6052566 taacttactctcacccaaaatcatgaaagagtaagttagcaagcctactctcactt 6052511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 607830 - 607875
Alignment:
Q  169 ggggttgctaacttacttccacctaaaaacatgaaggagtaagtta 214  Q
    |||||||||||||||||  ||||||||||| |||| ||||||||||    
T  607830 ggggttgctaacttactctcacctaaaaacgtgaaagagtaagtta 607875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 232
Target Start/End: Original strand, 6052319 - 6052360
Alignment:
Q  191 ctaaaaacatgaaggagtaagttagcaagcctactcccactt 232  Q
    |||||||||||||||||| |||||||||| ||||| ||||||    
T  6052319 ctaaaaacatgaaggagtgagttagcaagtctacttccactt 6052360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 169 - 252
Target Start/End: Original strand, 10765758 - 10765841
Alignment:
Q  169 ggggttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttagtttttactaaaaaaccat 252  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  10765758 ggggctgctaacttactcccacctaaaaacatgaaggagtaagttagcaagcctactcccacttgatttttactaaaaaaccat 10765841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 174 - 240
Target Start/End: Original strand, 38832845 - 38832911
Alignment:
Q  174 tgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttagttttta 240  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  38832845 tgctaacttactcccacctaaaaacatgaaggagtaagttagcaagcctactcccacttacttttta 38832911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 5494180 - 5494117
Alignment:
Q  169 ggggttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccactt 232  Q
    ||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||    
T  5494180 ggggttgctaacttattcccacccaaaaacatgaaggagtaagttagcaagcctactcccactt 5494117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 180 - 252
Target Start/End: Complemental strand, 3346737 - 3346665
Alignment:
Q  180 cttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttagt-ttttactaaaaaaccat 252  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||    
T  3346737 cttactcccacctaaaaacatgaaggagtaagttagcaaccctactcccac-tagtattttactaaaaaaccat 3346665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 174 - 231
Target Start/End: Original strand, 3346044 - 3346101
Alignment:
Q  174 tgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccact 231  Q
    |||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||    
T  3346044 tgctaacttagtcccacctaaaaacatgaaggagtaagttagcaaccctactcccact 3346101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 173 - 232
Target Start/End: Complemental strand, 39015544 - 39015485
Alignment:
Q  173 ttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccactt 232  Q
    ||||| ||||||| ||||| |||| |||||||||||||||||||||| ||||||||||||    
T  39015544 ttgctgacttactcccacccaaaatcatgaaggagtaagttagcaagtctactcccactt 39015485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 5493273 - 5493336
Alignment:
Q  169 ggggttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccactt 232  Q
    |||| |||||||||||| | ||| ||||| |||||| |||||||||||||| ||||||||||||    
T  5493273 ggggctgctaacttactccaacccaaaaatatgaagcagtaagttagcaagtctactcccactt 5493336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 12214989 - 12215062
Alignment:
Q  174 tgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttagt-ttttactaaaaa 247  Q
    |||||||||||| ||||  |||||||||| |||||||||||||||  |||||||||| |||| ||||||||||||    
T  12214989 tgctaacttactcccactcaaaaacatgatggagtaagttagcaactctactcccac-tagtattttactaaaaa 12215062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 18970646 - 18970593
Alignment:
Q  173 ttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactccca 229  Q
    ||||||||||||| ||||||||||||||   ||||||||||||||| ||||||||||    
T  18970646 ttgctaacttactcccacctaaaaacat---ggagtaagttagcaaacctactccca 18970593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 5489598 - 5489638
Alignment:
Q  193 aaaaacatgaaggagtaagttagcaagcctactcccactta 233  Q
    ||||| ||||||||||||||||||||| |||||||||||||    
T  5489598 aaaaatatgaaggagtaagttagcaagtctactcccactta 5489638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 18969946 - 18970009
Alignment:
Q  169 ggggttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccactt 232  Q
    |||| |||||| || || ||||||||||| |||||  |||||||||||||||||| ||||||||    
T  18969946 ggggctgctaattttctcccacctaaaaatatgaaatagtaagttagcaagcctaatcccactt 18970009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 177 - 232
Target Start/End: Original strand, 35908906 - 35908961
Alignment:
Q  177 taacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccactt 232  Q
    ||||||||| ||| |||||| |||||||||||||| ||||||| || |||||||||    
T  35908906 taacttactcccatctaaaatcatgaaggagtaagatagcaagtcttctcccactt 35908961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 232
Target Start/End: Complemental strand, 5491524 - 5491495
Alignment:
Q  203 aggagtaagttagcaagcctactcccactt 232  Q
    ||||||||||||||||||||||||||||||    
T  5491524 aggagtaagttagcaagcctactcccactt 5491495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 13413790 - 13413834
Alignment:
Q  176 ctaacttacttccacctaaaaacatgaaggagtaagttagcaagc 220  Q
    ||||||||| ||||||||||||||| |||| | ||||||||||||    
T  13413790 ctaacttacatccacctaaaaacattaaggtgcaagttagcaagc 13413834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 246
Target Start/End: Complemental strand, 14230520 - 14230448
Alignment:
Q  174 tgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttagtttttactaaaa 246  Q
    |||||||||||| |||  |||||| ||||||||||||||||||| |  ||||  |||||  ||||||||||||    
T  14230520 tgctaacttactaccaattaaaaatatgaaggagtaagttagcatgtttacttacacttgctttttactaaaa 14230448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 177 - 248
Target Start/End: Complemental strand, 19516677 - 19516606
Alignment:
Q  177 taacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttagtttttactaaaaaa 248  Q
    ||||||||| ||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  19516677 taacttactcccacacaaaaacatgaaggagtaagttagcaagtctactcccacttagtttttactaaaaaa 19516606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 169 - 247
Target Start/End: Original strand, 34799970 - 34800048
Alignment:
Q  169 ggggttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttagtttttactaaaaa 247  Q
    |||| |||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||  |||||||||||||    
T  34799970 ggggctgctaacttactcccacctaaaatcatgaaggagtaagttaccaagcctactcccacttgctttttactaaaaa 34800048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 169 - 251
Target Start/End: Complemental strand, 19986927 - 19986845
Alignment:
Q  169 ggggttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttagtttttactaaaaaacca 251  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| | | ||||||||| ||||| || |||| ||||    
T  19986927 ggggttgctaacttactcccacctaaaaacatgaaggagtaagttagcaatcttcctcccacttggttttgaccaaaatacca 19986845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 175 - 252
Target Start/End: Original strand, 2807991 - 2808068
Alignment:
Q  175 gctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttagtttttactaaaaaaccat 252  Q
    |||||||||||  |||||||||||| ||||||||||||||||||||||||| ||||||   |||||||||||||||||    
T  2807991 gctaacttactctcacctaaaaacacgaaggagtaagttagcaagcctacttccacttgcattttactaaaaaaccat 2808068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 20454585 - 20454505
Alignment:
Q  169 ggggttgctaacttacttccacctaaaaaca--tgaaggagtaagttagcaagcctactcccacttagtttttactaaaaa 247  Q
    |||| |||||||||||| | |||||||||||  |||||||| ||||||||||||||||||||||||  |||||||||||||    
T  20454585 ggggctgctaacttactccaacctaaaaacacatgaaggagaaagttagcaagcctactcccacttgctttttactaaaaa 20454505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 247
Target Start/End: Original strand, 19516171 - 19516208
Alignment:
Q  210 agttagcaagcctactcccacttagtttttactaaaaa 247  Q
    ||||||||||||||||||||||||||||||||||||||    
T  19516171 agttagcaagcctactcccacttagtttttactaaaaa 19516208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 3959734 - 3959690
Alignment:
Q  172 gttgctaacttacttccacctaaaaacatgaaggagtaagttagc 216  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||    
T  3959734 gttgctaacttactcccaccaaaaaacatgaaggagtaagttagc 3959690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 175 - 238
Target Start/End: Complemental strand, 17292682 - 17292620
Alignment:
Q  175 gctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttagtttt 238  Q
    ||||||||||||||||| |||||||| |||||||||| |||| | ||||| |||||||||||||    
T  17292682 gctaacttacttccaccaaaaaacattaaggagtaagctagcta-cctacacccacttagtttt 17292620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 30772826 - 30772764
Alignment:
Q  185 ttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttagtttttactaaaaa 247  Q
    |||||||||||||||||||| ||||| |||  |||| ||||| |||||| |||||||||||||    
T  30772826 ttccacctaaaaacatgaagaagtaaattaataagcatactctcacttactttttactaaaaa 30772764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 175 - 248
Target Start/End: Complemental strand, 17309319 - 17309247
Alignment:
Q  175 gctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttagtttttactaaaaaa 248  Q
    ||||||||||||||||| ||| |||| |||||||||| |||| | ||||| ||||||||||||| || ||||||    
T  17309319 gctaacttacttccaccaaaacacattaaggagtaagctagcta-cctacacccacttagttttgacaaaaaaa 17309247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 251
Target Start/End: Original strand, 3957302 - 3957378
Alignment:
Q  174 tgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttagtttttactaaaaaacca 251  Q
    |||||||| ||| ||||| ||||| ||||||  |||||||||||||| ||||||||||||  |||||| |||| ||||    
T  3957302 tgctaactaactcccacccaaaaatatgaagt-gtaagttagcaagcttactcccacttatgttttaccaaaatacca 3957378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 174 - 251
Target Start/End: Original strand, 24409222 - 24409299
Alignment:
Q  174 tgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttagtttttactaaaaaacca 251  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||  |||| ||| ||||||||    
T  24409222 tgctaacttactcccacccaaaaacatgaaggagtaagttagcaagcctactcccacttgcttttgacttaaaaacca 24409299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 38214630 - 38214690
Alignment:
Q  169 ggggttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactccca 229  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  38214630 ggggctgctaacttacttccacccaaaaacatgaaggagtaagttagcaagcctactccca 38214690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 5180933 - 5180978
Alignment:
Q  187 ccacctaaaaacatgaaggagtaagttagcaagcctactcccactt 232  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  5180933 ccacctaaaaacatgaaagagtaagttagcaagcctactcccactt 5180978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 193 - 232
Target Start/End: Complemental strand, 41829512 - 41829473
Alignment:
Q  193 aaaaacatgaaggagtaagttagcaagcctactcccactt 232  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  41829512 aaaaacatgaaggagtaagttagcaagtctactcccactt 41829473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 193 - 231
Target Start/End: Original strand, 29760894 - 29760932
Alignment:
Q  193 aaaaacatgaaggagtaagttagcaagcctactcccact 231  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  29760894 aaaaacatgaaggagtaagttagcaagcctactctcact 29760932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 5182286 - 5182235
Alignment:
Q  176 ctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcc 227  Q
    |||||||| | |||||||||||| ||||||| ||||||||||| ||||||||    
T  5182286 ctaacttattcccacctaaaaacgtgaaggattaagttagcaaccctactcc 5182235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 232
Target Start/End: Complemental strand, 18030451 - 18030390
Alignment:
Q  173 ttgctaacttact--tccacctaaaaacatgaaggagtaagttagcaagcctactcccactt 232  Q
    |||||||||||||  |||||| ||||| ||||| |||||||||| |||| ||||||||||||    
T  18030451 ttgctaacttactcttccacccaaaaatatgaaagagtaagttaacaagtctactcccactt 18030390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 169 - 246
Target Start/End: Original strand, 43020030 - 43020107
Alignment:
Q  169 ggggttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttagtttttactaaaa 246  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||   |||||||||||    
T  43020030 ggggctgctaacttactcccacctaaaaacatgaaggagtaagttagcaagcatactcccacttgtcttttactaaaa 43020107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 43021695 - 43021622
Alignment:
Q  174 tgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttagtttttactaaaaa 247  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||    
T  43021695 tgctaacttactcccacttaaaaacatgaaggagtaagttagcaagcctacacccacttaccttttactaaaaa 43021622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 169 - 247
Target Start/End: Original strand, 37521851 - 37521928
Alignment:
Q  169 ggggttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttagtttttactaaaaa 247  Q
    |||| |||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||   ||||||||||||    
T  37521851 ggggctgctaacttactcccacccaaaaacatgaaggagtaagttagcaa-cctactcccacttgtattttactaaaaa 37521928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 9011842 - 9011895
Alignment:
Q  197 acatgaaggagtaagttagcaagcctactcccacttagtttttactaaaaaacc 250  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  9011842 acatgaaggagtaagttagcaagtctactcccacttagtttttaccaaaaaacc 9011895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 177 - 248
Target Start/End: Original strand, 8237740 - 8237811
Alignment:
Q  177 taacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttagtttttactaaaaaa 248  Q
    ||||||||| ||||||||||| |||||||| ||||||||||||| ||||| ||||| ||||| || ||||||    
T  8237740 taacttactcccacctaaaaatatgaaggaataagttagcaagcttactctcacttggttttgaccaaaaaa 8237811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 169 - 251
Target Start/End: Original strand, 24515997 - 24516079
Alignment:
Q  169 ggggttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttagtttttactaaaaaacca 251  Q
    |||||||||||||||||  |||| ||||| |||||| ||  |||||||||||||||| ||||||  ||||||| |||||||||    
T  24515997 ggggttgctaacttactcacacccaaaaatatgaagaagcgagttagcaagcctactaccacttgttttttaccaaaaaacca 24516079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 171 - 229
Target Start/End: Complemental strand, 36656944 - 36656886
Alignment:
Q  171 ggttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactccca 229  Q
    ||||| |||||||||  ||||||||||||||||| |||||||||||||||||| |||||    
T  36656944 ggttgttaacttactctcacctaaaaacatgaagaagtaagttagcaagcctaatccca 36656886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 248
Target Start/End: Original strand, 42486318 - 42486380
Alignment:
Q  186 tccacctaaaaacatgaaggagtaagttagcaagcctactcccacttagtttttactaaaaaa 248  Q
    |||||||||||| |||||| ||||||||||||||  |||||||||||| ||||||| ||||||    
T  42486318 tccacctaaaaatatgaagaagtaagttagcaagtttactcccacttaatttttaccaaaaaa 42486380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 169 - 228
Target Start/End: Original strand, 8993660 - 8993719
Alignment:
Q  169 ggggttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactccc 228  Q
    |||||||||||||||||  || | |||| |||||||||||||||||||||| ||||||||    
T  8993660 ggggttgctaacttactctcatccaaaatcatgaaggagtaagttagcaagtctactccc 8993719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 44808356 - 44808411
Alignment:
Q  169 ggggttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctact 225  Q
    ||||| ||||||||||| |||||||||||||| || ||||||| |||||| ||||||    
T  44808356 ggggtcgctaacttactcccacctaaaaacat-aaagagtaagatagcaaccctact 44808411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 174 - 232
Target Start/End: Original strand, 30925380 - 30925438
Alignment:
Q  174 tgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccactt 232  Q
    |||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||    
T  30925380 tgctaacttactcccacctaaaaatattaaggagtaagttagcaagcctactcccactt 30925438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 174 - 232
Target Start/End: Complemental strand, 30926058 - 30926000
Alignment:
Q  174 tgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccactt 232  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||    
T  30926058 tgctaacttactcccatctaaaaacatgaaggagtaagttagcaagtctactcccactt 30926000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 173 - 247
Target Start/End: Complemental strand, 35603247 - 35603173
Alignment:
Q  173 ttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttagtttttactaaaaa 247  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||| || ||||||||  ||||||| |||||    
T  35603247 ttgctaacttactcccacccaaaaacatgaaggagtaagttagcaagcttattcccacttgctttttaccaaaaa 35603173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 5371114 - 5371034
Alignment:
Q  169 ggggttgctaacttacttccacctaaaaaca--tgaaggagtaagttagcaagcctactcccacttagtttttactaaaaa 247  Q
    |||| |||||||||||| | |||||||||||  |||||||| ||||||||||||||||||||||||  |||||||||||||    
T  5371114 ggggctgctaacttactccaacctaaaaacacatgaaggagaaagttagcaagcctactcccacttgctttttactaaaaa 5371034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 174 - 250
Target Start/End: Complemental strand, 19655717 - 19655641
Alignment:
Q  174 tgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttagtttttactaaaaaacc 250  Q
    |||||||||||| ||||||||||  |||||| |||||||||||||| ||||||| ||||| | ||||| ||||||||    
T  19655717 tgctaacttactcccacctaaaaggatgaagtagtaagttagcaagtctactccaacttattctttaccaaaaaacc 19655641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 174 - 233
Target Start/End: Complemental strand, 49605967 - 49605908
Alignment:
Q  174 tgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccactta 233  Q
    |||||||||||| ||||| ||||||||| ||||||||||||| ||| |||||||||||||    
T  49605967 tgctaacttactcccacccaaaaacatggaggagtaagttagaaagtctactcccactta 49605908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 2215740 - 2215684
Alignment:
Q  169 ggggttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctact 225  Q
    |||||||||||||||||  |||||||||| | ||||||||||| |||||||||||||    
T  2215740 ggggttgctaacttactctcacctaaaaatacgaaggagtaagctagcaagcctact 2215684  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 201 - 256
Target Start/End: Complemental strand, 46333897 - 46333843
Alignment:
Q  201 gaaggagtaagttagcaagcctactcccacttagtttttactaaaaaaccatcttt 256  Q
    |||||||||||||||||| ||||| ||||||| |||||||||||||||||| ||||    
T  46333897 gaaggagtaagttagcaa-cctacacccacttggtttttactaaaaaaccaacttt 46333843  T

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Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 24550014 - 24549936
Alignment:
Q  169 ggggttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttagtttttactaaaaa 247  Q
    |||| |||||||||| | ||||  ||||||||||| |||||||||||||| | ||||||| |||  |||||||||||||    
T  24550014 ggggctgctaacttagtcccactcaaaaacatgaatgagtaagttagcaaccttactcccgcttgatttttactaaaaa 24549936  T

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Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 174 - 251
Target Start/End: Original strand, 49605304 - 49605381
Alignment:
Q  174 tgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttagt-ttttactaaaaaacca 251  Q
    ||||||||||| |||||  ||||||||| | |||||||||||||| ||||||||||| |||| |||||| |||||||||    
T  49605304 tgctaacttacctccactcaaaaacatgtaagagtaagttagcaaccctactcccac-tagtattttaccaaaaaacca 49605381  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 177 - 252
Target Start/End: Original strand, 56553702 - 56553776
Alignment:
Q  177 taacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttagtttttactaaaaaaccat 252  Q
    ||||||||| | |||||||||||| |||||||||||||| || ||||  |||||||||| || |||||||| ||||    
T  56553702 taacttactcctacctaaaaacattaaggagtaagttagtaa-cctatacccacttagtattgactaaaaacccat 56553776  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 232
Target Start/End: Complemental strand, 2483884 - 2483826
Alignment:
Q  174 tgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccactt 232  Q
    ||||| ||||||  ||||||||||||||||||| |||| || ||||| |||||||||||    
T  2483884 tgctagcttactctcacctaaaaacatgaaggaataaggtaacaagcttactcccactt 2483826  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 35595928 - 35595991
Alignment:
Q  169 ggggttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccactta 233  Q
    ||||||| ||||||||| ||| ||||||| || |||| |||||||| |||||||||||| |||||    
T  35595928 ggggttgataacttactcccaactaaaaatatcaagg-gtaagttaacaagcctactcctactta 35595991  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 249
Target Start/End: Complemental strand, 51574087 - 51574008
Alignment:
Q  169 ggggttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttagtttttactaaaaaac 249  Q
    |||| |||||||||||  |||||||||||||| |||| | ||||||||||  |||| ||||||||  |||||| |||||||    
T  51574087 ggggctgctaacttacaaccacctaaaaacattaaggtgcaagttagcaa-actacacccacttatcttttaccaaaaaac 51574008  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 177 - 247
Target Start/End: Complemental strand, 7579398 - 7579328
Alignment:
Q  177 taacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttagtttttactaaaaa 247  Q
    ||||||||| ||||||||| |||||||||||||||||||||| || |||| |||||| |||| ||||||||    
T  7579398 taacttactaccacctaaacacatgaaggagtaagttagcaaacccactctcacttacttttaactaaaaa 7579328  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 174 - 232
Target Start/End: Complemental strand, 43071770 - 43071712
Alignment:
Q  174 tgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccactt 232  Q
    ||||||||||||  |||| |||||||||||||||||||||||||| |||||||||||||    
T  43071770 tgctaacttactctcacccaaaaacatgaaggagtaagttagcaaccctactcccactt 43071712  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 11060137 - 11060184
Alignment:
Q  169 ggggttgctaacttacttccacctaaaaacatgaaggagtaagttagc 216  Q
    ||||||| || ||| |||||||||||||||||||||||||||||||||    
T  11060137 ggggttgttagctttcttccacctaaaaacatgaaggagtaagttagc 11060184  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 169 - 240
Target Start/End: Original strand, 24252318 - 24252389
Alignment:
Q  169 ggggttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttagttttta 240  Q
    ||||||| ||||||||| | ||| |||||||||||||||||| ||| |||||||||| | ||||| ||||||    
T  24252318 ggggttgttaacttactccgacccaaaaacatgaaggagtaaattaacaagcctacttcgacttacttttta 24252389  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 3303578 - 3303524
Alignment:
Q  172 gttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactc 226  Q
    ||||||||||||||  || ||||||||||||| || |||||||||||||||||||    
T  3303578 gttgctaacttactctcatctaaaaacatgaaagactaagttagcaagcctactc 3303524  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 251
Target Start/End: Complemental strand, 23657918 - 23657837
Alignment:
Q  169 ggggttgctaacttacttccacctaaaaacatgaaggagtaagttagcaagcctactcccacttagtttttactaaaaaacca 251  Q
    ||||||||||||||||  |||||||||||||  |||| | ||||||||||| |||| || ||||| ||||||| ||| |||||    
T  23657918 ggggttgctaacttacacccacctaaaaacactaaggtgcaagttagcaag-ctacaccaacttattttttacaaaacaacca 23657837  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 247
Target Start/End: Original strand, 41554589 - 41554631
Alignment:
Q  205 gagtaagttagcaagcctactcccacttagtttttactaaaaa 247  Q
    ||||||||||||||||||||||||||||   ||||||||||||    
T  41554589 gagtaagttagcaagcctactcccacttgcattttactaaaaa 41554631  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 7567823 - 7567778
Alignment:
Q  202 aaggagtaagttagcaagcctactcccacttagtttttactaaaaa 247  Q
    |||||||||||||||||  |||| |||||||| |||||||||||||    
T  7567823 aaggagtaagttagcaaatctacacccacttactttttactaaaaa 7567778  T

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Target: scaffold0010 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 186 - 229
Target Start/End: Complemental strand, 157362 - 157319
Alignment:
Q  186 tccacctaaaaacatgaaggagtaagttagcaagcctactccca 229  Q
    ||||||||||||||||||||||||||||||||| || |||||||    
T  157362 tccacctaaaaacatgaaggagtaagttagcaaacccactccca 157319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 155337 - 155387
Alignment:
Q  197 acatgaaggagtaagttagcaagcctactcccacttagtttttactaaaaa 247  Q
    ||||||||||||||||||| || ||||| |||||||| ||||| |||||||    
T  155337 acatgaaggagtaagttaggaaccctacccccacttattttttcctaaaaa 155387  T

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Target: scaffold0006 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 220
Target Start/End: Original strand, 280324 - 280370
Alignment:
Q  174 tgctaacttacttccacctaaaaacatgaaggagtaagttagcaagc 220  Q
    ||||||||||| ||||||||||||||| |||| | ||||||||||||    
T  280324 tgctaacttacatccacctaaaaacattaaggtgcaagttagcaagc 280370  T

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Target: scaffold0486 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0486
Description:

Target: scaffold0486; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 1568 - 1519
Alignment:
Q  169 ggggttgctaacttacttccacctaaaaacatgaaggagtaagttagcaa 218  Q
    ||||| |||||||||||  |||| ||||| ||||||||||||||||||||    
T  1568 ggggtggctaacttactcgcacccaaaaagatgaaggagtaagttagcaa 1519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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