View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15287_low_3 (Length: 384)
Name: NF15287_low_3
Description: NF15287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15287_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 368
Target Start/End: Complemental strand, 34255477 - 34255127
Alignment:
| Q |
17 |
gcaggttcaagagcttgaatgtttgatctgaaatcataccatttgtccacataaactggaacattcccaattgatcatggaaatcatctgttagagcatt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34255477 |
gcaggttcaagagcttgaatgtttgatctgaaatcataccatttgtccacataaactggaacattcccaattgatcatggaaatcatctgttagagcatt |
34255378 |
T |
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| Q |
117 |
tcctacctgcagcaggcagtgaaatatactattgattgggttctaagaaaagtcttcgcctaatgactagtcgtggaatttcacatccnnnnnnnnngct |
216 |
Q |
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||||||||||||||| |||||||||||||||||||||| ||| |||||||||||| |||||||||| | |||||||||||||||| ||| |
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| T |
34255377 |
tcctacctgcagcagacagtgaaatatactattgattgagtt-aaagaaaagtctttccctaatgacttgcggtggaatttcacatcctttttttctgct |
34255279 |
T |
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| Q |
217 |
atttattctccacatctatgcaatcttgc-cgtgatatctactagtttttatgcnnnnnnnnnttgaattcataccatgtaacctttgagatttatagaa |
315 |
Q |
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|||||||||||||||| |||||||||||| | ||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
34255278 |
atttattctccacatcaatgcaatcttgctagggatatttactagtttttatgc-aaaaaaaattaaattcataccatgtaacctttgagatttatagaa |
34255180 |
T |
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| Q |
316 |
ttttggtttgtagctgagttgtacttgacaataacttggctaagttggggaac |
368 |
Q |
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||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
34255179 |
ttttgttttgtagctgagttgtgcttgacaataacttggctaagttggggaac |
34255127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 11 - 131
Target Start/End: Complemental strand, 26635795 - 26635675
Alignment:
| Q |
11 |
cacagagcaggttcaagagcttgaatgtttgatctgaaatcataccatttgtccacataaactggaacattcccaattgatcatggaaatcatctgttag |
110 |
Q |
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|||| |||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||| || |||||||||||||||||||||||||||| |
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| T |
26635795 |
cacatagcaagttcaagagcttgaatgtttgatccgaaatcataccatttgtccacaaaaactcgaaaatccccaattgatcatggaaatcatctgttac |
26635696 |
T |
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| Q |
111 |
agcatttcctacctgcagcag |
131 |
Q |
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| T |
26635695 |
agcatttcctacctgcagcag |
26635675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 11 - 131
Target Start/End: Complemental strand, 26642993 - 26642873
Alignment:
| Q |
11 |
cacagagcaggttcaagagcttgaatgtttgatctgaaatcataccatttgtccacataaactggaacattcccaattgatcatggaaatcatctgttag |
110 |
Q |
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|||| |||| |||||||||||||||||||||||| || ||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||| |
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| T |
26642993 |
cacatagcaagttcaagagcttgaatgtttgatccgagatcataccatttgtccacataaactcgaaaatccccaattgatcatggaaatcatctgttag |
26642894 |
T |
|
| Q |
111 |
agcatttcctacctgcagcag |
131 |
Q |
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||||||||| ||||||||||| |
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| T |
26642893 |
agcatttcccacctgcagcag |
26642873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 11 - 98
Target Start/End: Complemental strand, 34256910 - 34256823
Alignment:
| Q |
11 |
cacagagcaggttcaagagcttgaatgtttgatctgaaatcataccatttgtccacataaactggaacattcccaattgatcatggaa |
98 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34256910 |
cacagagcaggttcaagagcttgaatgtttgatctgaaatcataccatttgtccacataaactggaacattcccaattgatcatggaa |
34256823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 11 - 131
Target Start/End: Complemental strand, 26628220 - 26628100
Alignment:
| Q |
11 |
cacagagcaggttcaagagcttgaatgtttgatctgaaatcataccatttgtccacataaactggaacattcccaattgatcatggaaatcatctgttag |
110 |
Q |
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|||| ||||| |||| |||||||||||||||||| |||||||||||| | | |||||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
26628220 |
cacatagcagattcaggagcttgaatgtttgatccgaaatcataccactggaccacataaactggaacatccccaattgatcactgaaatcatctgttag |
26628121 |
T |
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| Q |
111 |
agcatttcctacctgcagcag |
131 |
Q |
| |
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||||||||||||||||||||| |
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| T |
26628120 |
agcatttcctacctgcagcag |
26628100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 281 - 368
Target Start/End: Complemental strand, 26642757 - 26642670
Alignment:
| Q |
281 |
gaattcataccatgtaacctttgagatttatagaattttggtttgtagctgagttgtacttgacaataacttggctaagttggggaac |
368 |
Q |
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|||||||||||||| ||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
26642757 |
gaattcataccatgaaacctttgaaatttatagaatcgtgttttgtagctgagttgtacttgacaataacttggctaagttgtggaac |
26642670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 282 - 368
Target Start/End: Original strand, 13639905 - 13639991
Alignment:
| Q |
282 |
aattcataccatgtaacctttgagatttatagaattttggtttgtagctgagttgtacttgacaataacttggctaagttggggaac |
368 |
Q |
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|||||||||||| |||||||| ||||||||||||| ||| |||||||||||||||| ||||| ||||||||||||||| |||||||| |
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| T |
13639905 |
aattcataccatataacctttaagatttatagaatcttgttttgtagctgagttgtgcttgataataacttggctaagctggggaac |
13639991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 281 - 367
Target Start/End: Complemental strand, 26635568 - 26635482
Alignment:
| Q |
281 |
gaattcataccatgtaacctttgagatttatagaattttggtttgtagctgagttgtacttgacaataacttggctaagttggggaa |
367 |
Q |
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|||||||||||| | ||||||||| ||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
26635568 |
gaattcataccaggaaacctttgaaatttatagaatcttgttttgtagccgagttgtacttgacaataacttggctaagttgaggaa |
26635482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 281 - 368
Target Start/End: Complemental strand, 26628009 - 26627922
Alignment:
| Q |
281 |
gaattcataccatgtaacctttgagatttatagaattttggtttgtagctgagttgtacttgacaataacttggctaagttggggaac |
368 |
Q |
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|||| ||||||||||| ||||||||||||||||||| ||| ||||| || ||||||||||| ||||||||||||||||||| ||||| |
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| T |
26628009 |
gaatgcataccatgtaccctttgagatttatagaatcttgttttgtttctaagttgtacttggcaataacttggctaagttgcggaac |
26627922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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