View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15287_low_5 (Length: 307)
Name: NF15287_low_5
Description: NF15287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15287_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 16 - 297
Target Start/End: Complemental strand, 44965774 - 44965493
Alignment:
| Q |
16 |
gctgctgcaacagcgtatcatcactcctgttcgccggagaactggctccggccaccgtacccgatgacctactcttacccaaatgcttcgttaccactct |
115 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44965774 |
gctgctgcaacaacgtatcatcactcctgttcgccggagaactagctccggccaccgtacccgatgacctactcttacccaaatgcttcgttaccactct |
44965675 |
T |
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| Q |
116 |
catcccagccggaaaactcccctgtttctctttcctcaaagagccaaccgccggtgaagacgacggcgaagccgtcactgtcatcccctcgccggagaat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
44965674 |
catcccagccggaaaactcccctgtttctctttcctcaaagagccaaccgccggtgaagacgacggtgaagctgtcactgtcatcccctcgccggagaat |
44965575 |
T |
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| Q |
216 |
ttcaccttatcaccatacctcttcgaaaccttaacataaagaggcttaatcagcttcaaatatttctgcaaaatctcctttg |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44965574 |
ttcaccttatcaccatacctcttcgaaaccttaacataaagaggcttaatcagcttcaaatatttctgcaaaatctcctttg |
44965493 |
T |
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