View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15289_high_1 (Length: 707)
Name: NF15289_high_1
Description: NF15289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15289_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 95 - 372
Target Start/End: Original strand, 1869001 - 1869268
Alignment:
| Q |
95 |
tttgtgcttcatcttgtcacctaacttgaacccaatacttaaaattttgcatataacatatgctccaaaatgttacttcttgcatagtaacaaaaataga |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1869001 |
tttgtgcttcatcttgtcacctaacttgaacccaatacttaaaattttgcatataacatatgctccaaaatgttacttcttgcatagtaataaaaataga |
1869100 |
T |
|
| Q |
195 |
tctacacattaagtaaatgagaatacaactagtagtaactacacttgtttcatacgtaactagcacatgctattgtgtcgatatcaccattctgagagtt |
294 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1869101 |
tctacacat----------agaatacaactagtagtaactacacttgtttcatacgtaactagcacatgctattgtgtcgatatcaccattctgagagtt |
1869190 |
T |
|
| Q |
295 |
ttcactaattcattcactgagatgttgtagccatcacccatctgcattatatatatcatagcaagtcagaatctcatg |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1869191 |
ttcactaattcattcactgagatgttgtagccatcacccatctgcattatatatatcatagcaagtcagaatctcatg |
1869268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 454 - 688
Target Start/End: Original strand, 1869349 - 1869582
Alignment:
| Q |
454 |
ctaaccgtcatactgaaacttatgtgggtttcaccactttacatgaaatacatttctaaattgtagtatccacactaaatttcatgcgataagaaagtga |
553 |
Q |
| |
|
||||||||||| |||||||||||||||| ||| |||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1869349 |
ctaaccgtcatgttgaaacttatgtgggtctcatcactttacgtgggatacatttctaaattatagtatccacactaaatttcatgcgataagaaagtga |
1869448 |
T |
|
| Q |
554 |
ctgttagagagtgttaagaaagagagtgtttccgatattcctatataaatagccgttatcaatccgcatatgttttttaaaagaaaaatgagactctttt |
653 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1869449 |
ctattagagagtgttaagaaagagagtgtttccgatattcctatataaa-agccgttatcaatccgcatatgttttttaaaagaaaaatgagactctttt |
1869547 |
T |
|
| Q |
654 |
agagcattatgtaccttacaaatgatgatgatgtc |
688 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1869548 |
agagcattatgtaccttacaaatgatggtgatgtc |
1869582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 227 - 369
Target Start/End: Original strand, 1865056 - 1865198
Alignment:
| Q |
227 |
tagtaactacacttgtttcatacgtaactagcacatgctattgtgtcgatatcaccattctgagagttttcactaattcattcactgagatgttgtagcc |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | || |||||| |||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1865056 |
tagtaactacacttgtttcatacgtaactagcacatgctattgtctagagatcacctttcttagagttttcactaattcattcactgtgatgttgtagcc |
1865155 |
T |
|
| Q |
327 |
atcacccatctgcattatatatatcatagcaagtcagaatctc |
369 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
1865156 |
atcacccatctgcattatatataccatagcaagttagaatctc |
1865198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University