View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15289_high_13 (Length: 358)
Name: NF15289_high_13
Description: NF15289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15289_high_13 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 15 - 358
Target Start/End: Original strand, 38422803 - 38423146
Alignment:
| Q |
15 |
aacctgtgattgcattgaataggaggaagttagaaaaatggtacaaattgtagataaatcagaagctgcaaccacaacaaaggtaaaagaagcagagggt |
114 |
Q |
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| T |
38422803 |
aacctgtgattgcattgaataggaggaagttagaaaaatggtacaaattgtagataaatcagaagctgcaaccacaacaaaggtaaaagaagcagagggt |
38422902 |
T |
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| Q |
115 |
gagaacaagaacaacagcctcaaaggcagagacaaccttaaaaacaacatcttccatgaatgaaacaggcaaagtaagtctgttccacttgaatgatgat |
214 |
Q |
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| T |
38422903 |
gagaacaagaacaacagcctcaaaggcagagacaaccttaaaaacaacatcttccatgaatgaaacaggcaaagtaagtgtgttccacttgaatgatgat |
38423002 |
T |
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| Q |
215 |
gatttccacaaaaacttcaacctcaatgcttccttcttcagtctcttcaacaacgatcttttcttcccaacaattgacattccgttttttcctttgatta |
314 |
Q |
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| T |
38423003 |
gatttccacaaaaacttcaacctcaatgcttccttcttcagtctcttcaacaacgatcttttcttcccaacaattgacattacgttttttcctttgatta |
38423102 |
T |
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| Q |
315 |
attactcaaataatcaactttgctttgtgtttgcaactaagaga |
358 |
Q |
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| T |
38423103 |
attactcaaataatcaactttgctttgtgtttgcaactaagaga |
38423146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 70 - 314
Target Start/End: Original strand, 38412971 - 38413218
Alignment:
| Q |
70 |
aaatcagaagctgcaaccacaacaaaggtaaaagaagcagagggtgagaacaagaacaacagcctcaaaggcagagacaaccttaaaaacaacatcttcc |
169 |
Q |
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| T |
38412971 |
aaatcagaagctgcaaccacaacaaaggtaaaagaagcagagggtgagaacaagaacaacagcctcaaaggcagagacaaccttaaaaacaatatcttcc |
38413070 |
T |
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| Q |
170 |
atgaatgaaacaggcaaagtaagtctgttccacttgaa---tgatgatgatttccacaaaaacttcaacctcaatgcttccttcttcagtctcttcaaca |
266 |
Q |
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| T |
38413071 |
atgaatgaaaccggcgaagtaagtctgttccacctgaatcctgatgaagattgccacaaaaacttcaacctcaatgtttccttcttcagcctcttcaaca |
38413170 |
T |
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| Q |
267 |
acgatcttttcttcccaacaattgacattccgttttttcctttgatta |
314 |
Q |
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| T |
38413171 |
acgatcttttcttctcaaccattgacattccgtttttctctttgatta |
38413218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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