View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15289_high_17 (Length: 330)
Name: NF15289_high_17
Description: NF15289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15289_high_17 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 15 - 330
Target Start/End: Original strand, 30715281 - 30715596
Alignment:
| Q |
15 |
acatcatcatagaattccaaaacaaaagttatcagaagaatacaaagacgaggacaacgataataatagtactgatgcaaacgatgtggattctaaatct |
114 |
Q |
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| T |
30715281 |
acatcataatagaattccaaaacaaaagttatcagaagaatacaaagacgaggacaacgataataatagtactgatgcagacgatgtggattctgaatct |
30715380 |
T |
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| Q |
115 |
caagaggatcaacaccgacaatttgaagatgaaaccgaaaaagaggaagaagacaatgatgacgatgacgatgatgtttctgaatccttgtccaatgcac |
214 |
Q |
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| T |
30715381 |
caagaggatcaacaccgacagtttgaagatgaaaccgaagaagaggaagaagacaatgatgacgatgacgatgatgtttctgaatccttgtccaatgcac |
30715480 |
T |
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| Q |
215 |
cacatggtaaaccatctttctcacaagaagcacacattggcaatgttccagaaagcccttcagtttcttcttataatgtcccaaatcccacacaacccat |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
30715481 |
cacatggtaaaccatctttctcacaagaagcacacattggcaatgttccagaaagcccttcagtttcttcttataatgtccgaaatcccacacaacccat |
30715580 |
T |
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| Q |
315 |
gaatgcatcttcatac |
330 |
Q |
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|||||||||||||||| |
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| T |
30715581 |
gaatgcatcttcatac |
30715596 |
T |
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