View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15289_high_18 (Length: 326)

Name: NF15289_high_18
Description: NF15289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15289_high_18
NF15289_high_18
[»] chr3 (13 HSPs)
chr3 (66-283)||(34897722-34897940)
chr3 (1-88)||(1995486-1995573)
chr3 (3-77)||(52859272-52859346)
chr3 (277-326)||(34899926-34899975)
chr3 (3-70)||(44637986-44638052)
chr3 (4-73)||(30235416-30235484)
chr3 (3-36)||(33632866-33632899)
chr3 (1-73)||(10474400-10474471)
chr3 (3-71)||(29586380-29586447)
chr3 (4-71)||(24754702-24754769)
chr3 (4-71)||(24763699-24763766)
chr3 (6-71)||(51982549-51982613)
chr3 (2-66)||(47750274-47750337)
[»] chr6 (7 HSPs)
chr6 (3-79)||(2800566-2800642)
chr6 (3-79)||(7215807-7215883)
chr6 (3-71)||(17828532-17828599)
chr6 (36-78)||(9952993-9953035)
chr6 (4-80)||(4804493-4804569)
chr6 (11-69)||(23936305-23936365)
chr6 (14-70)||(29229149-29229204)
[»] chr1 (11 HSPs)
chr1 (3-79)||(39426254-39426330)
chr1 (3-77)||(35534741-35534813)
chr1 (7-80)||(32887735-32887807)
chr1 (3-75)||(26860010-26860081)
chr1 (5-71)||(26372298-26372362)
chr1 (4-71)||(50294026-50294093)
chr1 (16-70)||(49384627-49384680)
chr1 (14-78)||(1228496-1228560)
chr1 (4-80)||(12380831-12380907)
chr1 (4-80)||(12384898-12384974)
chr1 (14-78)||(18976260-18976324)
[»] chr8 (6 HSPs)
chr8 (3-77)||(42761757-42761831)
chr8 (1-80)||(21360318-21360400)
chr8 (3-73)||(42338008-42338077)
chr8 (16-82)||(20169125-20169190)
chr8 (3-36)||(17520426-17520459)
chr8 (4-81)||(37966397-37966473)
[»] chr2 (14 HSPs)
chr2 (3-78)||(4446852-4446927)
chr2 (3-78)||(30217517-30217592)
chr2 (3-77)||(30709154-30709228)
chr2 (9-79)||(30721564-30721632)
chr2 (3-80)||(19908824-19908899)
chr2 (4-78)||(2063399-2063472)
chr2 (3-79)||(31618724-31618798)
chr2 (5-71)||(22061433-22061498)
chr2 (6-54)||(36929763-36929810)
chr2 (1-36)||(35315286-35315321)
chr2 (1-75)||(30857638-30857711)
chr2 (3-37)||(34512022-34512056)
chr2 (28-77)||(6946335-6946384)
chr2 (4-36)||(19905926-19905958)
[»] chr7 (8 HSPs)
chr7 (1-78)||(47270592-47270668)
chr7 (3-40)||(29844335-29844372)
chr7 (3-71)||(4888511-4888579)
chr7 (3-71)||(5463867-5463934)
chr7 (4-71)||(44648009-44648076)
chr7 (16-82)||(44390835-44390900)
chr7 (14-79)||(33450562-33450627)
chr7 (5-49)||(18064601-18064643)
[»] chr4 (13 HSPs)
chr4 (8-79)||(15178628-15178699)
chr4 (7-76)||(36532673-36532741)
chr4 (8-73)||(33841766-33841830)
chr4 (14-70)||(5815267-5815322)
chr4 (4-71)||(23610687-23610754)
chr4 (5-74)||(42844148-42844216)
chr4 (3-75)||(1871321-1871392)
chr4 (4-71)||(19901881-19901948)
chr4 (4-71)||(39862562-39862629)
chr4 (6-78)||(56453777-56453848)
chr4 (1-37)||(5817977-5818013)
chr4 (4-36)||(23474156-23474188)
chr4 (4-80)||(56558324-56558400)
[»] chr5 (7 HSPs)
chr5 (3-71)||(29341039-29341106)
chr5 (7-73)||(9460597-9460662)
chr5 (3-71)||(43309152-43309220)
chr5 (4-71)||(11775838-11775905)
chr5 (44-78)||(21213953-21213987)
chr5 (3-36)||(31653079-31653112)
chr5 (7-35)||(2984389-2984417)


Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 66 - 283
Target Start/End: Complemental strand, 34897940 - 34897722
Alignment:
Q  66 aggatcctaacccctctcacccacctctattacatgttgacttggattccaacaaattctccaaaaacaaaacagtttttacaatgatattttctatttg 165  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34897940 aggatcctaacccctctcacccacctcaattacatgttgacttggattccgacaaattctccaaaaacaaaacagtttttacaatgatattttctatttg 34897841  T
Q  166 tatcaaaattatagttctaccgaacaaaacggtattgaagatgtccacttcta-nnnnnnnnatcagctgatttgtccatttctacaacatttaagaaat 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||    
T  34897840 tatcaaaattatagttctaccgaacaaaacggtattgaagatgtccacttctatttttttttatcagctgatttgtccatttctacaacatttaagaaat 34897741  T
Q  265 ggagagagggtttttatat 283  Q
    |||||||||||||||||||    
T  34897740 ggagagagggtttttatat 34897722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 1995486 - 1995573
Alignment:
Q  1 attatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccctctcaccca 88  Q
    |||||||||||| | ||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||| | |||||||    
T  1995486 attatctattttctatgtctatctctcttcaaattgtgtacttccatttatttgataaaatgaagaggatcctaacccatgtcaccca 1995573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 77
Target Start/End: Original strand, 52859272 - 52859346
Alignment:
Q  3 tatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacc 77  Q
    ||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||| |||||||| |||||    
T  52859272 tatctattttatgtgtctatctctctctaaattgtgtattttcatttattttatcaaatggagaggatcataacc 52859346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 277 - 326
Target Start/End: Original strand, 34899926 - 34899975
Alignment:
Q  277 tttatatgcatataggtaaagtttggtagtttcaactttcaagttgagat 326  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34899926 tttatatgcatataggtaaagtttggtagtttcaactttcaagttgagat 34899975  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 44637986 - 44638052
Alignment:
Q  3 tatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggat 70  Q
    |||||||||||||||| |||||||||| ||||||  ||| |||||||||||| |||||||| ||||||    
T  44637986 tatctattttatgtgtttatctctctcaaaattgcatac-tccatttattttgtcaaatgatgaggat 44638052  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 30235484 - 30235416
Alignment:
Q  4 atctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcct 73  Q
    ||||||||| | ||||||||||||| |||||||  |||| |||||||||||| |||||||||| ||||||    
T  30235484 atctattttttatgtctatctctcttcaaattgcatact-ccatttattttaacaaatgaagatgatcct 30235416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 33632866 - 33632899
Alignment:
Q  3 tatctattttatgtgtctatctctctccaaattg 36  Q
    ||||||||||||||||||||||||||||||||||    
T  33632866 tatctattttatgtgtctatctctctccaaattg 33632899  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 10474471 - 10474400
Alignment:
Q  1 attatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcct 73  Q
    |||||||||||||||||||||| |||||| ||||||  ||| |||||||||| | ||||||  ||||||||||    
T  10474471 attatctattttatgtgtctatatctctcaaaattgcatac-tccatttattatgtcaaatagagaggatcct 10474400  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 29586380 - 29586447
Alignment:
Q  3 tatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 71  Q
    ||||||||||||||||||||||||||||||| ||  ||| |||||||||| |   ||||||||||||||    
T  29586380 tatctattttatgtgtctatctctctccaaactgcatac-tccatttattatgctaaatgaagaggatc 29586447  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 24754702 - 24754769
Alignment:
Q  4 atctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 71  Q
    ||||||||| ||||||||||||||||||| ||||  |  ||||||||||||  |||||| ||||||||    
T  24754702 atctattttgtgtgtctatctctctccaacttgtaaaactccatttattttgccaaatggagaggatc 24754769  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 24763699 - 24763766
Alignment:
Q  4 atctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 71  Q
    ||||||||| ||||||||||||||||||| ||||  |  ||||||||||||  |||||| ||||||||    
T  24763699 atctattttgtgtgtctatctctctccaacttgtaaaactccatttattttgccaaatggagaggatc 24763766  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 71
Target Start/End: Complemental strand, 51982613 - 51982549
Alignment:
Q  6 ctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 71  Q
    ||||||||||| |||||||||||||||||||  | ||||||||||||||   ||||| ||||||||    
T  51982613 ctattttatgtatctatctctctccaaattgcat-cttccatttatttttataaatggagaggatc 51982549  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 47750337 - 47750274
Alignment:
Q  2 ttatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaaga 66  Q
    ||||||||||| ||||| ||| ||||| |||||||| ||| | |||||||||| |||||||||||    
T  47750337 ttatctattttttgtgtttatgtctcttcaaattgtatacct-catttattttgtcaaatgaaga 47750274  T

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Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 79
Target Start/End: Complemental strand, 2800642 - 2800566
Alignment:
Q  3 tatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccc 79  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||    
T  2800642 tatctattttatgtgtctatctctctccaaattgtgtatttccattaattttatcaaatggagaggatcctaacccc 2800566  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 79
Target Start/End: Complemental strand, 7215883 - 7215807
Alignment:
Q  3 tatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccc 79  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||    
T  7215883 tatctattttatgtgtctatctctctccaaattgtgcacttccatttattttatcaaatggagaggatactaacccc 7215807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 17828599 - 17828532
Alignment:
Q  3 tatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 71  Q
    ||||||||||||||||||||||||||||||||||  ||| |||| ||||| || |||||| ||||||||    
T  17828599 tatctattttatgtgtctatctctctccaaattgcatac-tccaattattataccaaatgtagaggatc 17828532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 78
Target Start/End: Complemental strand, 9953035 - 9952993
Alignment:
Q  36 gtgtacttccatttattttatcaaatgaagaggatcctaaccc 78  Q
    ||||||||||||||||||||||||||| |||||||| ||||||    
T  9953035 gtgtacttccatttattttatcaaatggagaggatcttaaccc 9952993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 4804493 - 4804569
Alignment:
Q  4 atctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccct 80  Q
    ||||||||| ||||||||||||||||||| ||||  |  ||||||||||||  |||||| |||||||| | ||||||    
T  4804493 atctattttttgtgtctatctctctccaacttgtaaaactccatttattttgccaaatggagaggatcttcacccct 4804569  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 23936305 - 23936365
Alignment:
Q  11 ttatgtgtctatctctctc--caaattgtgtacttccatttattttatcaaatgaagagga 69  Q
    |||||||||||||||||||  | |||||||||||| |||| | ||||||||||| ||||||    
T  23936305 ttatgtgtctatctctctctccgaattgtgtactttcattcaatttatcaaatggagagga 23936365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 29229149 - 29229204
Alignment:
Q  14 tgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggat 70  Q
    |||||||||||||||||||||||  ||| |||||||||| || |||||| |||||||    
T  29229149 tgtgtctatctctctccaaattgcatac-tccatttattataccaaatggagaggat 29229204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 39426254 - 39426330
Alignment:
Q  3 tatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccc 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||    
T  39426254 tatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatggagatgatactaacccc 39426330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 77
Target Start/End: Complemental strand, 35534813 - 35534741
Alignment:
Q  3 tatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacc 77  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||| ||||||    
T  35534813 tatctattttatgtgtctatctctct--aaattgtgtacttccatttattttatcaaatggagaggatactaacc 35534741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 80
Target Start/End: Complemental strand, 32887807 - 32887735
Alignment:
Q  7 tattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccct 80  Q
    |||||||||||||||||| |||| ||| |||||||| |||||||||||||||||||||||||||||||| ||||    
T  32887807 tattttatgtgtctatctttctctaaactgtgtact-ccatttattttatcaaatgaagaggatcctaatccct 32887735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 26860081 - 26860010
Alignment:
Q  3 tatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaa 75  Q
    |||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||  ||| ||||||||    
T  26860081 tatctattttatgtgtctatctctcttcaaattatgtac-tccatttattttatcaaatagagatgatcctaa 26860010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 26372298 - 26372362
Alignment:
Q  5 tctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 71  Q
    ||||||||| ||||||||||||||  ||||| | |||||||||||||||||||||||  ||||||||    
T  26372298 tctattttacgtgtctatctctct--aaattatctacttccatttattttatcaaattgagaggatc 26372362  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 50294093 - 50294026
Alignment:
Q  4 atctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 71  Q
    ||||||||| ||||||||||||||||||| |||   |  ||||||||||||  |||||||||||||||    
T  50294093 atctattttttgtgtctatctctctccaacttgcaaatctccatttattttgccaaatgaagaggatc 50294026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 49384680 - 49384627
Alignment:
Q  16 tgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggat 70  Q
    |||||||||||||| ||||||| || |||||||||||||| |||||| |||||||    
T  49384680 tgtctatctctctctaaattgtata-ttccatttattttaacaaatggagaggat 49384627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 1228560 - 1228496
Alignment:
Q  14 tgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaaccc 78  Q
    ||||||| |||||||||||||||   |  |||||||||||||  |||||||||||||| ||||||    
T  1228560 tgtgtctgtctctctccaaattgcaaaactccatttattttagtaaatgaagaggatcttaaccc 1228496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 12380907 - 12380831
Alignment:
Q  4 atctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccct 80  Q
    ||||||||| ||||||||||||||||||| |||   |  ||||||||||||  |||||| |||||||| | ||||||    
T  12380907 atctattttttgtgtctatctctctccaacttgcaaaactccatttattttgccaaatggagaggatcttcacccct 12380831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 12384974 - 12384898
Alignment:
Q  4 atctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccct 80  Q
    ||||||||| ||||||||||||||||||| |||   |  ||||||||||||  |||||| |||||||| | ||||||    
T  12384974 atctattttttgtgtctatctctctccaacttgcaaaactccatttattttgccaaatggagaggatcttcacccct 12384898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 18976324 - 18976260
Alignment:
Q  14 tgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaaccc 78  Q
    |||||||||||||||||||||||   |  || |||||||||| |||||| |||||||| ||||||    
T  18976324 tgtgtctatctctctccaaattgcaaaactcaatttattttagcaaatggagaggatcttaaccc 18976260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 3 - 77
Target Start/End: Original strand, 42761757 - 42761831
Alignment:
Q  3 tatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacc 77  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||||||| || |||||||||||||||||    
T  42761757 tatctattttatgtgtctatctctcttcaaattgcgtacttccatttattttattaagtgaagaggatcctaacc 42761831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 21360318 - 21360400
Alignment:
Q  1 attatctattttatgtgtctatctctctccaaattgtgta----cttccatttattttatcaaatgaagaggatcctaacccct 80  Q
    ||||||||| |||||||| |||||||||||||||| ||||    |||| ||||||||||||||||| |||||||||||||||||    
T  21360318 attatctatattatgtgtttatctctctccaaattatgtatgtacttc-atttattttatcaaatggagaggatcctaacccct 21360400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 42338077 - 42338008
Alignment:
Q  3 tatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcct 73  Q
    |||||||||||  ||| ||| |||||||||||| | |||||  ||||||||||||||||||||||||||||    
T  42338077 tatctattttacatgtatatatctctccaaattatatactta-atttattttatcaaatgaagaggatcct 42338008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 20169125 - 20169190
Alignment:
Q  16 tgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccctct 82  Q
    |||||||||||||||||||||  | ||||||||||||||   ||||| |||||||| ||||||||||    
T  20169125 tgtctatctctctccaaattgcat-cttccatttatttttataaatggagaggatcttaacccctct 20169190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 17520426 - 17520459
Alignment:
Q  3 tatctattttatgtgtctatctctctccaaattg 36  Q
    |||||||||||||||||||| |||||||||||||    
T  17520426 tatctattttatgtgtctatatctctccaaattg 17520459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 37966473 - 37966397
Alignment:
Q  4 atctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccctc 81  Q
    ||||||||| ||||| ||||||||| |||||||   | |||||||||||||  |||||| |||||||| |||||||||    
T  37966473 atctattttttgtgtttatctctcttcaaattgcaaa-ttccatttattttgccaaatggagaggatcttaacccctc 37966397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 4446927 - 4446852
Alignment:
Q  3 tatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaaccc 78  Q
    |||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||| ||||||| |||||||    
T  4446927 tatctattttatgtgtctatctctcttcaaattgtacacttccatttattttatcaaatggagaggatactaaccc 4446852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 30217517 - 30217592
Alignment:
Q  3 tatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaaccc 78  Q
    ||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||  |||||||||||||||    
T  30217517 tatctattttatgtgtctatctcactctaaattgtgtgcttccatttattttatcaaatagagaggatcctaaccc 30217592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 77
Target Start/End: Original strand, 30709154 - 30709228
Alignment:
Q  3 tatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacc 77  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||||||| | ||| ||||||||||||||    
T  30709154 tatctattttatgtgtctatctctctccaaattgtgtactttcattgattttataagatggagaggatcctaacc 30709228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 30721632 - 30721564
Alignment:
Q  9 ttttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccc 79  Q
    |||||||||||||||||||  ||||||||||||||| ||||||||||||||||| || ||||| |||||||    
T  30721632 ttttatgtgtctatctctc--caaattgtgtacttctatttattttatcaaatggagcggatcttaacccc 30721564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 3 - 80
Target Start/End: Original strand, 19908824 - 19908899
Alignment:
Q  3 tatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccct 80  Q
    ||||||||||||||||||||||| ||||||||||  |||| ||||||||| |||||||||||||||||| | ||||||    
T  19908824 tatctattttatgtgtctatctc-ctccaaattgcatact-ccatttattatatcaaatgaagaggatctttacccct 19908899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 4 - 78
Target Start/End: Original strand, 2063399 - 2063472
Alignment:
Q  4 atctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaaccc 78  Q
    ||||||||| |||||||||||||||||||||||   || || ||||||||| |||||||||||||||| ||||||    
T  2063399 atctattttttgtgtctatctctctccaaattgcaaac-tctatttattttgtcaaatgaagaggatcttaaccc 2063472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 79
Target Start/End: Complemental strand, 31618798 - 31618724
Alignment:
Q  3 tatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccc 79  Q
    |||||||||||| | ||||||| |||||||||||| |||| |||||| ||| |||||||| ||||||||||||||||    
T  31618798 tatctattttatatatctatctttctccaaattgtatact-ccatttcttt-atcaaatggagaggatcctaacccc 31618724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 22061498 - 22061433
Alignment:
Q  5 tctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 71  Q
    |||||||||||||||||||||||| |||||||  ||||| |||||||||| ||||||  ||||||||    
T  22061498 tctattttatgtgtctatctctcttcaaattgcatactt-catttattttgtcaaattgagaggatc 22061433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 36929763 - 36929810
Alignment:
Q  6 ctattttatgtgtctatctctctccaaattgtgtacttccatttatttt 54  Q
    |||||||||||||||||||||||||||||||  ||| ||||||||||||    
T  36929763 ctattttatgtgtctatctctctccaaattgcatac-tccatttatttt 36929810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 35315321 - 35315286
Alignment:
Q  1 attatctattttatgtgtctatctctctccaaattg 36  Q
    |||||||||||||||||||||||||||| |||||||    
T  35315321 attatctattttatgtgtctatctctcttcaaattg 35315286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 30857711 - 30857638
Alignment:
Q  1 attatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaa 75  Q
    |||||||||||| |||||||| |||||| ||||||   ||| |||||||||||| | ||||| ||||||||||||    
T  30857711 attatctattttttgtgtctacctctcttcaaattacatac-tccatttattttgtgaaatggagaggatcctaa 30857638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 34512056 - 34512022
Alignment:
Q  3 tatctattttatgtgtctatctctctccaaattgt 37  Q
    |||||||||||||||||||||| ||||||||||||    
T  34512056 tatctattttatgtgtctatctttctccaaattgt 34512022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 6946335 - 6946384
Alignment:
Q  28 tccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacc 77  Q
    ||||||||||| | || ||||||||||||||||||  |||||||||||||    
T  6946335 tccaaattgtgcattttcatttattttatcaaatggggaggatcctaacc 6946384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 19905926 - 19905958
Alignment:
Q  4 atctattttatgtgtctatctctctccaaattg 36  Q
    |||||||||||||||||||||||||| ||||||    
T  19905926 atctattttatgtgtctatctctctcaaaattg 19905958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 47270592 - 47270668
Alignment:
Q  1 attatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaaccc 78  Q
    ||||||||||| |||||||||||| |||| |||||||||| ||||||||||||||||||||  |||||||||||||||    
T  47270592 attatctattt-atgtgtctatctatctctaaattgtgtaattccatttattttatcaaatagagaggatcctaaccc 47270668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 29844335 - 29844372
Alignment:
Q  3 tatctattttatgtgtctatctctctccaaattgtgta 40  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29844335 tatctattttatgtgtctatctctctccaaattgtgta 29844372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 4888511 - 4888579
Alignment:
Q  3 tatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 71  Q
    |||||||||| ||||||||||||||||||| |||   |  |||||||||||| ||||||| ||||||||    
T  4888511 tatctattttttgtgtctatctctctccaacttgcaaatctccatttattttgtcaaatggagaggatc 4888579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 5463934 - 5463867
Alignment:
Q  3 tatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 71  Q
    |||||||||||||||| ||| |||||||||||||| ||| |  ||||||| ||||||||| ||||||||    
T  5463934 tatctattttatgtgtttatatctctccaaattgtatac-tatatttattatatcaaatggagaggatc 5463867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 44648009 - 44648076
Alignment:
Q  4 atctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 71  Q
    ||||||||| ||||||||||||||||||| |||   |  |||||||||||| ||||||| ||||||||    
T  44648009 atctattttttgtgtctatctctctccaacttgcaaaactccatttattttgtcaaatggagaggatc 44648076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 44390835 - 44390900
Alignment:
Q  16 tgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccctct 82  Q
    |||||||||||||||||||||  | ||||||||||||||   ||||| |||||||| ||||||||||    
T  44390835 tgtctatctctctccaaattgcat-cttccatttatttttataaatggagaggatcttaacccctct 44390900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 33450562 - 33450627
Alignment:
Q  14 tgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccc 79  Q
    |||||||||||||||||||||||   |  || |||||||||| |||||| |||||||| |||||||    
T  33450562 tgtgtctatctctctccaaattgcaaaactcaatttattttagcaaatggagaggatcttaacccc 33450627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 18064601 - 18064643
Alignment:
Q  5 tctattttatgtgtctatctctctccaaattgtgtacttccattt 49  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||    
T  18064601 tctattttatgtgtctatctctctcc-aattgtgta-ttccattt 18064643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 15178699 - 15178628
Alignment:
Q  8 attttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccc 79  Q
    ||||||||||| ||||||||| |||||| |||||||||||| ||||||||||||| |||| |||||||||||    
T  15178699 attttatgtgtttatctctcttcaaattatgtacttccattcattttatcaaatggagagaatcctaacccc 15178628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 36532673 - 36532741
Alignment:
Q  7 tattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaac 76  Q
    ||||||||||||||||||||||| |||||||| || |||||||||||||||| ||| |||||||| ||||    
T  36532673 tattttatgtgtctatctctctctaaattgtgaac-tccatttattttatcagatggagaggatcttaac 36532741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 33841830 - 33841766
Alignment:
Q  8 attttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcct 73  Q
    ||||| |||||||||||||||||||||||| ||| |||||||| |||| |||||| ||||||||||    
T  33841830 attttttgtgtctatctctctccaaattgtatac-tccatttactttaacaaatggagaggatcct 33841766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 5815322 - 5815267
Alignment:
Q  14 tgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggat 70  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||| |||||||    
T  5815322 tgtgtctatctctctcaaaattttgtact-ccatttattttatcaaatggagaggat 5815267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 23610687 - 23610754
Alignment:
Q  4 atctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 71  Q
    ||||||||| ||||||||||||||||||| |||   |  |||||||||||||||||||| ||||||||    
T  23610687 atctattttttgtgtctatctctctccaacttgcaaaactccatttattttatcaaatggagaggatc 23610754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 42844216 - 42844148
Alignment:
Q  5 tctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatccta 74  Q
    |||||||||||||||||||| |||||||||||| ||  || ||||||||||| | ||| |||||||||||    
T  42844216 tctattttatgtgtctatctatctccaaattgt-taactctatttattttataatatggagaggatccta 42844148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 1871321 - 1871392
Alignment:
Q  3 tatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaa 75  Q
    ||||||| || | |||||||||||||||||||||  ||| |||||||||||| ||||||  ||||||||||||    
T  1871321 tatctatattttttgtctatctctctccaaattgcatac-tccatttattttgtcaaattgagaggatcctaa 1871392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 19901948 - 19901881
Alignment:
Q  4 atctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 71  Q
    ||||||||| ||||||||||||||||||| |||   |  ||||||||||||| |||||| ||||||||    
T  19901948 atctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatggagaggatc 19901881  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 39862562 - 39862629
Alignment:
Q  4 atctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 71  Q
    ||||||||| |||||||||||||||| || |||   | ||| ||||||||||||||||| ||||||||    
T  39862562 atctattttttgtgtctatctctctcaaacttgcaaaattctatttattttatcaaatggagaggatc 39862629  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 56453848 - 56453777
Alignment:
Q  6 ctattttatgtgtctatctctctccaaattgtgtacttccatttattt-tatcaaatgaagaggatcctaaccc 78  Q
    ||||||| |||||||||||||||||||||||  | ||||||||||||| ||| ||||| |||||||| ||||||    
T  56453848 ctattttttgtgtctatctctctccaaattgcat-cttccatttatttctat-aaatggagaggatcttaaccc 56453777  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 5817977 - 5818013
Alignment:
Q  1 attatctattttatgtgtctatctctctccaaattgt 37  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  5817977 attatctcttttttgtgtctatctctctccaaattgt 5818013  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 23474156 - 23474188
Alignment:
Q  4 atctattttatgtgtctatctctctccaaattg 36  Q
    |||||||||||||||||||||||| ||||||||    
T  23474156 atctattttatgtgtctatctctccccaaattg 23474188  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 56558324 - 56558400
Alignment:
Q  4 atctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcctaacccct 80  Q
    ||||||||| ||||||||||||||||||| |||   |  ||||||||||||  |||||| |||||||| | ||||||    
T  56558324 atctattttttgtgtctatctctctccaacttgcaaaactccatttattttgccaaatggagaggatcttcacccct 56558400  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 29341039 - 29341106
Alignment:
Q  3 tatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 71  Q
    |||||||||| |||||||||||||||||||||||  ||| |||||||||| || |||||| ||||||||    
T  29341039 tatctattttctgtgtctatctctctccaaattgcatac-tccatttattataccaaatggagaggatc 29341106  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 9460662 - 9460597
Alignment:
Q  7 tattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatcct 73  Q
    |||| |||||||||||||||||||||||||  ||| || |||||||||| |||||| ||||||||||    
T  9460662 tattatatgtgtctatctctctccaaattgcatac-tctatttattttaccaaatggagaggatcct 9460597  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 43309152 - 43309220
Alignment:
Q  3 tatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 71  Q
    |||||||||| | ||||||||||||||||| |||   |  ||||||||||||||||||| |||||||||    
T  43309152 tatctattttttatgtctatctctctccaacttgcaaaactccatttattttatcaaataaagaggatc 43309220  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 11775838 - 11775905
Alignment:
Q  4 atctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatgaagaggatc 71  Q
    ||||||||| ||||||||||||||||||| |||   |  ||||||||||||| |||||| ||||||||    
T  11775838 atctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatggagaggatc 11775905  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 78
Target Start/End: Original strand, 21213953 - 21213987
Alignment:
Q  44 ccatttattttatcaaatgaagaggatcctaaccc 78  Q
    ||||||||||||||||||| |||||||||||||||    
T  21213953 ccatttattttatcaaatggagaggatcctaaccc 21213987  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 31653079 - 31653112
Alignment:
Q  3 tatctattttatgtgtctatctctctccaaattg 36  Q
    |||||||||||||||| |||||||||||||||||    
T  31653079 tatctattttatgtgtttatctctctccaaattg 31653112  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 35
Target Start/End: Complemental strand, 2984417 - 2984389
Alignment:
Q  7 tattttatgtgtctatctctctccaaatt 35  Q
    |||||||||||||||||||||||||||||    
T  2984417 tattttatgtgtctatctctctccaaatt 2984389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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