View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15289_high_21 (Length: 307)
Name: NF15289_high_21
Description: NF15289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15289_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 5638828 - 5638539
Alignment:
| Q |
1 |
aattgaaatataacagtaatccagtaaaattaattagaattttcttatatattatggaccacaaaccatgactannnnnnnnacttaaatttgagtttgg |
100 |
Q |
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| T |
5638828 |
aattgaaatataacagtaatccagtaaaattaattagaattttcttatatattatggaccacaaaccatgactattttttttacttaaatttgagtttgg |
5638729 |
T |
|
| Q |
101 |
aggaagtaaattcttaatttccacatttacaatctttcttctcttttagtgtttcagtatacatggaaatccaagaaggttatgaacagtatcacatatg |
200 |
Q |
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| T |
5638728 |
aggaagtaaattcttaatttccacatttacaatctttcttctcttttagtgtttcagtatacatggaaatccaagaaggttatgaacagtatcacatatg |
5638629 |
T |
|
| Q |
201 |
acactaccatacttggtgatctataactcttgcacttcccgtgcagaatcctccttctgtggccagtgcatgtcccatagcagcagttat |
290 |
Q |
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| T |
5638628 |
acactaccatacttggtgatctataactcttgcacttcccgtgcagaatcctccttctgtggccagtgcatgtcccatagcagcagttat |
5638539 |
T |
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Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 152 - 290
Target Start/End: Original strand, 30634326 - 30634466
Alignment:
| Q |
152 |
tttcagtatacatggaaatccaagaaggtt-atgaa-cagtatcacatatgacactaccatacttggtgatctataactcttgcacttcccgtgcagaat |
249 |
Q |
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|||||||| || |||||||| ||| |||| ||||| |||||| ||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
30634326 |
tttcagtacacttggaaatctaagttggtttatgaatcagtattacaaatgacactaccatacctggtgatctataactcttgcacttccggtgcagaat |
30634425 |
T |
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| Q |
250 |
cctccttctgtggccagtgcatgtcccatagcagcagttat |
290 |
Q |
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| T |
30634426 |
cctccttctgtggccaatgcatgtcccatagcagcagttat |
30634466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 198 - 290
Target Start/End: Original strand, 21423160 - 21423252
Alignment:
| Q |
198 |
atgacactaccatacttggtgatctataactcttgcacttcccgtgcagaatcctccttctgtggccagtgcatgtcccatagcagcagttat |
290 |
Q |
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||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
21423160 |
atgacactaccatacctggtgatctataactcttgcacttccggtgcagaatcctccttctgtggccaatgcatgtcccatagcagcagttat |
21423252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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