View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15289_high_22 (Length: 305)
Name: NF15289_high_22
Description: NF15289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15289_high_22 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 23 - 305
Target Start/End: Original strand, 33994621 - 33994903
Alignment:
| Q |
23 |
acatcatcactattatttactattgcttattgtttcaatttattttgttacatttcttaaacttttagtccttaagattataggtggcaagtgaacctta |
122 |
Q |
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| T |
33994621 |
acatcatcactattatttactattgcttattgtttcaatttattttgttacatttcttaaacttttagtccttaagattataggtggcaagtgaacctta |
33994720 |
T |
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| Q |
123 |
tctaatattctctgctgttaattatgttatcatgatcattgatttgagatccgacggtccaaatattccgtctcgctgttacagcagagaatccaaattc |
222 |
Q |
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| T |
33994721 |
tctaatattctctgctgttaattatgttatcatgatcattgatttgagatccgacggtccaaatattccgtctcgctgttacagcagagaatccaaattc |
33994820 |
T |
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| Q |
223 |
atctaaaaatgttgttgtgaataggtgtttctgttggagctgggtggcaaagtgttgtagcatatgtaaacataggctgctat |
305 |
Q |
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| T |
33994821 |
atctaaaaatgttgttgtgaataggtgtttctgttggagctgggtggcaaagtgttgtagcatatgtaaacataggctgctat |
33994903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 243 - 305
Target Start/End: Original strand, 33986409 - 33986471
Alignment:
| Q |
243 |
ataggtgtttctgttggagctgggtggcaaagtgttgtagcatatgtaaacataggctgctat |
305 |
Q |
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| T |
33986409 |
ataggagttgctgttggagctggctggcaaagcgttgcagcatatgtaaacataggctcctat |
33986471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 242 - 298
Target Start/End: Complemental strand, 9234562 - 9234506
Alignment:
| Q |
242 |
aataggtgtttctgttggagctgggtggcaaagtgttgtagcatatgtaaacatagg |
298 |
Q |
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| T |
9234562 |
aataggagtttctgttggagctgggtggcaaaggattgtagcatatgtaaacatagg |
9234506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 242 - 298
Target Start/End: Complemental strand, 9214796 - 9214740
Alignment:
| Q |
242 |
aataggtgtttctgttggagctgggtggcaaagtgttgtagcatatgtaaacatagg |
298 |
Q |
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| T |
9214796 |
aataggagtttctgttggagctggatggcaaagcattgtagcatatgtaaacatagg |
9214740 |
T |
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