View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15289_high_3 (Length: 565)

Name: NF15289_high_3
Description: NF15289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15289_high_3
NF15289_high_3
[»] chr1 (4 HSPs)
chr1 (81-373)||(42169271-42169572)
chr1 (371-547)||(42169655-42169831)
chr1 (22-63)||(42169212-42169253)
chr1 (396-453)||(48064182-48064241)
[»] chr7 (3 HSPs)
chr7 (81-184)||(21686047-21686150)
chr7 (208-257)||(7725551-7725600)
chr7 (424-453)||(5620261-5620290)
[»] scaffold0002 (1 HSPs)
scaffold0002 (137-243)||(333841-333947)
[»] chr4 (2 HSPs)
chr4 (399-453)||(17823012-17823068)
chr4 (424-452)||(30090132-30090160)
[»] chr5 (1 HSPs)
chr5 (425-453)||(14955597-14955625)
[»] chr3 (1 HSPs)
chr3 (424-452)||(37308232-37308260)


Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 81 - 373
Target Start/End: Original strand, 42169271 - 42169572
Alignment:
Q  81 ggcagagtgcatgcaatatgaggcaagcaggtatagtgaacatggctgagttacttgagaagcagttagcttcagagttgtcaaagatgtcattagaaga 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  42169271 ggcagagtgcatgcaatatgaggcaagcaggtatagtgaacatggctgagttacttgagaagcagttagcttcagatttgtcaaagatgtcattagaaga 42169370  T
Q  181 agctttcactcttgctcgtgctttcagccattatcttactatgatgggtatagctgaaactcaccataggtaat-aataatccatggctacac------- 272  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||           
T  42169371 agctttcactcttgctcgtgctttcagccattatcttactatgatgggtatagctgaaactcaccataggtaataaataatccatggctacactaactct 42169470  T
Q  273 -attatttgttggtaattaatactactttccaaatttcatttttgaattcacttattcaagcttatctagtgacataagcacttttataaccgtttatga 371  Q
     ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42169471 gattatttgttggtaattaatattactttccaaatttcatttttgaattcacttattcaagcttatctagtgacataagcacttttataaccgtttatga 42169570  T
Q  372 ga 373  Q
    ||    
T  42169571 ga 42169572  T

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Target: chr1; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 371 - 547
Target Start/End: Original strand, 42169655 - 42169831
Alignment:
Q  371 agaaataacttatagataagtgaatatcatgataagtccttatgctatgaggctaattaagttgtttatccaaacagggcctacgtagggtaatggtaat 470  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42169655 agaaataacttatagataagtgaatatcatgatgagtccttatgctatgaggctaattaagttgtttatccaaacagggcctacgtagggtaatggtaat 42169754  T
Q  471 ctctaacagaaattacattttcacagggttcgtaaaggagggaatatggcacaaatttcaaaatcttgtgatgatgt 547  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42169755 ctctaacagaaattacatgttcacagggttcgtaaaggagggaatatggcacaaatttcaaaatcttgtgatgatgt 42169831  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 42169212 - 42169253
Alignment:
Q  22 gacacgcctttgataagtgagtgctagtgaatgatgtttcta 63  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  42169212 gacacgcctttcataagtgagtaatagtgaatgatgtttcta 42169253  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 396 - 453
Target Start/End: Complemental strand, 48064241 - 48064182
Alignment:
Q  396 atcatgataagtccttatgctatgag--gctaattaagttgtttatccaaacagggccta 453  Q
    |||||||||||  |||||||||| ||  || |||||||||||||||||||||| ||||||    
T  48064241 atcatgataagggcttatgctataagctgcaaattaagttgtttatccaaacatggccta 48064182  T

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Target: chr7 (Bit Score: 88; Significance: 5e-42; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 81 - 184
Target Start/End: Complemental strand, 21686150 - 21686047
Alignment:
Q  81 ggcagagtgcatgcaatatgaggcaagcaggtatagtgaacatggctgagttacttgagaagcagttagcttcagagttgtcaaagatgtcattagaaga 180  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  21686150 ggcagagtggatgtaatatgaggcaagcaggtatagtgaacatggctgagttaattgagaagcagttagcttcagagttgtcaaagatgtctttagaaga 21686051  T
Q  181 agct 184  Q
    ||||    
T  21686050 agct 21686047  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 208 - 257
Target Start/End: Complemental strand, 7725600 - 7725551
Alignment:
Q  208 ccattatcttactatgatgggtatagctgaaactcaccataggtaataat 257  Q
    ||||||||||||| |||  | |||||||||||||||||||||||||||||    
T  7725600 ccattatcttactgtgactgatatagctgaaactcaccataggtaataat 7725551  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 453
Target Start/End: Original strand, 5620261 - 5620290
Alignment:
Q  424 taattaagttgtttatccaaacagggccta 453  Q
    ||||||||||||||||||||||||||||||    
T  5620261 taattaagttgtttatccaaacagggccta 5620290  T

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Target: scaffold0002 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 137 - 243
Target Start/End: Original strand, 333841 - 333947
Alignment:
Q  137 gagaagcagttagcttcagagttgtcaaagatgtcattagaagaagctttcactcttgctcgtgctttcagccattatcttactatgatgggtatagctg 236  Q
    ||||||||||| ||||||||||| || ||||||   ||||||||||||   || ||||||||||| ||||| || ||||||||||||||| | |||||||    
T  333841 gagaagcagttggcttcagagttatccaagatgaacttagaagaagctcaaacacttgctcgtgcattcagtcactatcttactatgatgagcatagctg 333940  T
Q  237 aaactca 243  Q
    |||||||    
T  333941 aaactca 333947  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 453
Target Start/End: Complemental strand, 17823068 - 17823012
Alignment:
Q  399 atgataagtccttatgctatgag--gctaattaagttgtttatccaaacagggccta 453  Q
    |||||||| ||||||||||||||  || ||||||| |||||||||||||| ||||||    
T  17823068 atgataagcccttatgctatgagctgcaaattaagctgtttatccaaacaaggccta 17823012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 424 - 452
Target Start/End: Complemental strand, 30090160 - 30090132
Alignment:
Q  424 taattaagttgtttatccaaacagggcct 452  Q
    |||||||||||||||||||||||||||||    
T  30090160 taattaagttgtttatccaaacagggcct 30090132  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 425 - 453
Target Start/End: Complemental strand, 14955625 - 14955597
Alignment:
Q  425 aattaagttgtttatccaaacagggccta 453  Q
    |||||||||||||||||||||||||||||    
T  14955625 aattaagttgtttatccaaacagggccta 14955597  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 424 - 452
Target Start/End: Original strand, 37308232 - 37308260
Alignment:
Q  424 taattaagttgtttatccaaacagggcct 452  Q
    |||||||||||||||||||||||||||||    
T  37308232 taattaagttgtttatccaaacagggcct 37308260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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