View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15289_high_4 (Length: 547)
Name: NF15289_high_4
Description: NF15289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15289_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 209 - 493
Target Start/End: Original strand, 47116848 - 47117128
Alignment:
| Q |
209 |
tcatcacttctcaggtaattacaatagttatattttatcaaagatattcaataaccaatttcttttatatctttagtttcaattcaaggagataaatatt |
308 |
Q |
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| T |
47116848 |
tcatcgcttctcaggtaattacaatagttatattttatcaaagatattcaataaccaatttcttttatatctttagtttcaattcaaggagataaatatt |
47116947 |
T |
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| Q |
309 |
cataccttttaacgatcaaatcacaaagcaaggtaagcaatatcaacgtatcaatgactcgatcgatcaccttttaacgattatttttaatttcttgttt |
408 |
Q |
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| T |
47116948 |
cataccttttaacgatcaaatcacaaagcaaggtaagcaatatcaacgtatcaatgac----tcgatcaccttttaacgattatttttaatttcttgttt |
47117043 |
T |
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| Q |
409 |
tgtagatggataggcggagaatgtatgataggcaacaaagctcaacgggaacgccaacatcaccatcttcgccggtgatgatgtc |
493 |
Q |
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| T |
47117044 |
tgtagatggataggcggagaatgtatgataggcaacaaagctcaacgggaacgccaacatcaccgtcttcaccggtgatgatgtc |
47117128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 30 - 208
Target Start/End: Original strand, 47116595 - 47116773
Alignment:
| Q |
30 |
attatttggtggaaaactggtaaggaaagagaaaatgaaagaaattatttgtgctaattgtggtattaattactgaaagttcggggagacagttacaaag |
129 |
Q |
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| T |
47116595 |
attatttggtggaaaactggtaaggaaagagaaaatgaaagaaattatttgtgctaattgtggtattaattactgaaagttcggggagacagttacaaag |
47116694 |
T |
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| Q |
130 |
aaaatttccacgtcatacatctcattcaatgatgttatgttaatgaacgaatccccaatccttccacaatagatggaca |
208 |
Q |
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| T |
47116695 |
aaaagttccacgtcatacatctcattcaatgatgttatgttaatgaacgaatccccaatccttccacaatagatggaca |
47116773 |
T |
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