View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15289_high_9 (Length: 383)

Name: NF15289_high_9
Description: NF15289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15289_high_9
NF15289_high_9
[»] chr6 (14 HSPs)
chr6 (30-363)||(31289542-31289882)
chr6 (132-363)||(26651948-26652185)
chr6 (132-363)||(26757916-26758153)
chr6 (181-363)||(27421222-27421403)
chr6 (31-118)||(27713873-27713960)
chr6 (32-118)||(26853949-26854035)
chr6 (30-101)||(26631744-26631815)
chr6 (30-101)||(26737719-26737790)
chr6 (31-118)||(26966390-26966477)
chr6 (30-109)||(27422333-27422412)
chr6 (30-118)||(26890735-26890823)
chr6 (30-118)||(27651967-27652055)
chr6 (176-253)||(26632634-26632711)
chr6 (176-253)||(26738610-26738687)
[»] chr8 (1 HSPs)
chr8 (28-109)||(29269748-29269829)
[»] scaffold0003 (2 HSPs)
scaffold0003 (181-363)||(65960-66141)
scaffold0003 (30-109)||(64951-65030)
[»] scaffold0349 (1 HSPs)
scaffold0349 (31-118)||(17984-18071)


Alignment Details
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 30 - 363
Target Start/End: Original strand, 31289542 - 31289882
Alignment:
Q  30 cagaacctgtgtagcagaaacaacactgtatggctcttgtgattaataaggtattcttgtgtaaaaacacttctctgccagttcagtttcttgtgtaaaa 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31289542 cagaacctgtgtagcagaaacaacactgtatggctcttgtgattaataaggtattcttgtgtaaaaacacttctctgccagttcagtttcttgtgtaaaa 31289641  T
Q  130 acacagctgcagcaacctgtactggatgttgataaatggttgcca-------caacatattctcggtgaaaggttgttatcaagatctgtgatatttgcg 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||     
T  31289642 acacagctgcagcaacctgtactggatgttgataaatggttgccagagagtgcaacatattctcggtgaaaggttgttatcaagatctgtgatatttgca 31289741  T
Q  223 ttttcccaatgatttcaatgatgaattattgaaggcagtgcagagatatggctcacatcagtgccnnnnnnngaatgtgtttagtatgagacttttacga 322  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||    
T  31289742 ttttcccaatgatttcaatgatgaattattgaaggcagtgcagagatatggctcacatcagtgccaaaaaaagaatgtgtttagtatgagacttttacga 31289841  T
Q  323 gatagacttcctaaccagctcgattgtgaggattccctatg 363  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  31289842 gatagacttcctaaccggctcgattgtgaggattccctatg 31289882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 132 - 363
Target Start/End: Original strand, 26651948 - 26652185
Alignment:
Q  132 acagctgcagcaacctgtactggatgttgataaatggttgcca-------caacatattctcggtgaaaggttgttatcaagatctgtgatatttgcgtt 224  Q
    |||||||||| |||||||| |||||||||||||||||||||||       ||||| ||||||||||||||| |||||| |||||||||||||||||||||    
T  26651948 acagctgcagaaacctgtattggatgttgataaatggttgccagagagtgcaacagattctcggtgaaaggatgttatgaagatctgtgatatttgcgtt 26652047  T
Q  225 ttcccaatgatttcaatgatgaattattgaaggcagtgcagaga-tatggctcacatcagtgccnnnnnnngaatgtgtttagtatgagacttttacgag 323  Q
    || ||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||| ||||        ||||||||| || || |||| |||| ||    
T  26652048 tttccaatgatttcaaggatgaattattgaaggcagtgcagagattatggttcacatcattgccaaaaaa--aatgtgtttggtttgggactcttacaag 26652145  T
Q  324 atagacttcctaaccagctcgattgtgaggattccctatg 363  Q
    ||||||||| ||||| ||||||||||||||||||||||||    
T  26652146 atagacttcataaccggctcgattgtgaggattccctatg 26652185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 132 - 363
Target Start/End: Original strand, 26757916 - 26758153
Alignment:
Q  132 acagctgcagcaacctgtactggatgttgataaatggttgcca-------caacatattctcggtgaaaggttgttatcaagatctgtgatatttgcgtt 224  Q
    |||||||||| |||||||| |||||||||||||||||||||||       ||||| ||||||||||||||| |||||| |||||||||||||||||||||    
T  26757916 acagctgcagaaacctgtattggatgttgataaatggttgccagagagtgcaacagattctcggtgaaaggatgttatgaagatctgtgatatttgcgtt 26758015  T
Q  225 ttcccaatgatttcaatgatgaattattgaaggcagtgcagaga-tatggctcacatcagtgccnnnnnnngaatgtgtttagtatgagacttttacgag 323  Q
    || ||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||| ||||        ||||||||| || || |||| |||| ||    
T  26758016 tttccaatgatttcaaggatgaattattgaaggcagtgcagagattatggttcacatcattgccaaaaaa--aatgtgtttggtttgggactcttacaag 26758113  T
Q  324 atagacttcctaaccagctcgattgtgaggattccctatg 363  Q
    ||||||||| ||||| ||||||||||||||||||||||||    
T  26758114 atagacttcataaccggctcgattgtgaggattccctatg 26758153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 181 - 363
Target Start/End: Complemental strand, 27421403 - 27421222
Alignment:
Q  181 attctcggtgaaaggttgttatcaagatctgtgatatttgcgttttcccaatgatttcaatgatgaattattgaaggcagtgcagaga-tatggctcaca 279  Q
    |||||| | |||||| ||||||||||| |||||| ||||||||||| | ||||||||| | ||||||||||||||||||||||| ||| |||||||||||    
T  27421403 attctcagagaaaggatgttatcaagagctgtgaaatttgcgtttttc-aatgatttcgacgatgaattattgaaggcagtgcatagattatggctcaca 27421305  T
Q  280 tcagtgccnnnnnnngaatgtgtttagtatgagacttttacgagatagacttcctaaccagctcgattgtgaggattccctatg 363  Q
    |||||||        |  ||||| | ||  |||||| |||| |||||| |||||||||| ||||||||||||||||||||||||    
T  27421304 tcagtgctaaaaaaag-ttgtgtatggttggagactcttacaagataggcttcctaaccggctcgattgtgaggattccctatg 27421222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 31 - 118
Target Start/End: Complemental strand, 27713960 - 27713873
Alignment:
Q  31 agaacctgtgtagcagaaacaacactgtatggctcttgtgattaataaggtattcttgtgtaaaaacacttctctgccagttcagttt 118  Q
    ||||| |||||||||| |||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||  |||||||    
T  27713960 agaacttgtgtagcagcaacaacactgtatgtctcttgtgattattaagttattcttgtgtaaaaacacttctctgccaaatcagttt 27713873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 32 - 118
Target Start/End: Original strand, 26853949 - 26854035
Alignment:
Q  32 gaacctgtgtagcagaaacaacactgtatggctcttgtgattaataaggtattcttgtgtaaaaacacttctctgccagttcagttt 118  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||  |||||||    
T  26853949 gaacttgtgtagcagcaacaacactgtatggctcttgtgattaataagttattcttgtgtaaaaacaattttctgccaagtcagttt 26854035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 26631744 - 26631815
Alignment:
Q  30 cagaacctgtgtagcagaaacaacactgtatggctcttgtgattaataaggtattcttgtgtaaaaacactt 101  Q
    |||||| |||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  26631744 cagaacttgtgtagctgcaacaacattgtatggctcttgtgattaataaggtattcttgtgtaaaaacactt 26631815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 26737719 - 26737790
Alignment:
Q  30 cagaacctgtgtagcagaaacaacactgtatggctcttgtgattaataaggtattcttgtgtaaaaacactt 101  Q
    |||||| |||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  26737719 cagaacttgtgtagctgcaacaacattgtatggctcttgtgattaataaggtattcttgtgtaaaaacactt 26737790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 31 - 118
Target Start/End: Original strand, 26966390 - 26966477
Alignment:
Q  31 agaacctgtgtagcagaaacaacactgtatggctcttgtgattaataaggtattcttgtgtaaaaacacttctctgccagttcagttt 118  Q
    ||||| |||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||  |||||||    
T  26966390 agaacttgtgtagcagcaacaaaactgtatggctcttgagattaataaggtattcttgtgtaaaaacactttgctgccaaatcagttt 26966477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 30 - 109
Target Start/End: Complemental strand, 27422412 - 27422333
Alignment:
Q  30 cagaacctgtgtagcagaaacaacactgtatggctcttgtgattaataaggtattcttgtgtaaaaacacttctctgcca 109  Q
    |||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || || |||||||    
T  27422412 cagaacttgagtagcagaaacaacactgtatggctcttgtaattaataaggtattcttgtgtaaaagcagttttctgcca 27422333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 118
Target Start/End: Original strand, 26890735 - 26890823
Alignment:
Q  30 cagaacctgtgtagcagaaacaacactgtatggctcttgtgattaataaggtattcttgtgtaaaaacacttctctgccagttcagttt 118  Q
    |||||| |||||  ||| |||||||| | ||||||||||||||||||||| ||||||| ||||||||||||| |||||||  |||||||    
T  26890735 cagaacttgtgtcacagcaacaacaccgaatggctcttgtgattaataagttattcttttgtaaaaacacttttctgccaaatcagttt 26890823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 118
Target Start/End: Complemental strand, 27652055 - 27651967
Alignment:
Q  30 cagaacctgtgtagcagaaacaacactgtatggctcttgtgattaataaggtattcttgtgtaaaaacacttctctgccagttcagttt 118  Q
    |||||| || ||||||| |||||||||||||  || |||||||||||||| ||||| ||||||||||||||| |||||||  |||||||    
T  27652055 cagaacttgcgtagcagcaacaacactgtataacttttgtgattaataagttattcatgtgtaaaaacacttttctgccaaatcagttt 27651967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 253
Target Start/End: Original strand, 26632634 - 26632711
Alignment:
Q  176 aacatattctcggtgaaaggttgttatcaagatctgtgatatttgcgttttcccaatgatttcaatgatgaattattg 253  Q
    |||| ||||||||||||||| |||||||||||   |||| ||||   ||||| | |||||||| ||||||||||||||    
T  26632634 aacagattctcggtgaaaggatgttatcaagagtagtgaaattttgtttttcacgatgatttcgatgatgaattattg 26632711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 253
Target Start/End: Original strand, 26738610 - 26738687
Alignment:
Q  176 aacatattctcggtgaaaggttgttatcaagatctgtgatatttgcgttttcccaatgatttcaatgatgaattattg 253  Q
    |||| ||||||||||||||| |||||||||||   |||| ||||   ||||| | |||||||| ||||||||||||||    
T  26738610 aacagattctcggtgaaaggatgttatcaagagtagtgaaattttgtttttcacgatgatttcgatgatgaattattg 26738687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 28 - 109
Target Start/End: Complemental strand, 29269829 - 29269748
Alignment:
Q  28 agcagaacctgtgtagcagaaacaacactgtatggctcttgtgattaataaggtattcttgtgtaaaaacacttctctgcca 109  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  29269829 agcagaacttgtgtagcagcaacaacactgtatggctcttgtgattattaagttattcttgtgtaaaaacacttctctgcca 29269748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 181 - 363
Target Start/End: Original strand, 65960 - 66141
Alignment:
Q  181 attctcggtgaaaggttgttatcaagatctgtgatatttgcgttttcccaatgatttcaatgatgaattattgaaggcagtgcagaga-tatggctcaca 279  Q
    |||||| | |||||| ||||||||||| |||||| ||||||||||| | ||||||||| | ||||||||||||||||||||||| ||| |||||||||||    
T  65960 attctcagagaaaggatgttatcaagagctgtgaaatttgcgtttttc-aatgatttcgacgatgaattattgaaggcagtgcatagattatggctcaca 66058  T
Q  280 tcagtgccnnnnnnngaatgtgtttagtatgagacttttacgagatagacttcctaaccagctcgattgtgaggattccctatg 363  Q
    |||||||        |  ||||| | ||  |||||| |||| |||||| |||||||||| ||||||||||||||||||||||||    
T  66059 tcagtgctaaaaaaag-ttgtgtatggttggagactcttacaagataggcttcctaaccggctcgattgtgaggattccctatg 66141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 30 - 109
Target Start/End: Original strand, 64951 - 65030
Alignment:
Q  30 cagaacctgtgtagcagaaacaacactgtatggctcttgtgattaataaggtattcttgtgtaaaaacacttctctgcca 109  Q
    |||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || || |||||||    
T  64951 cagaacttgagtagcagaaacaacactgtatggctcttgtaattaataaggtattcttgtgtaaaagcagttttctgcca 65030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 31 - 118
Target Start/End: Original strand, 17984 - 18071
Alignment:
Q  31 agaacctgtgtagcagaaacaacactgtatggctcttgtgattaataaggtattcttgtgtaaaaacacttctctgccagttcagttt 118  Q
    ||||| |||||||||| |||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||  |||||||    
T  17984 agaacttgtgtagcagcaacaacactgtatgtctcttgtgattattaagttattcttgtgtaaaaacacttctctgccaaatcagttt 18071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University