View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15289_low_1 (Length: 324)
Name: NF15289_low_1
Description: NF15289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15289_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 42 - 315
Target Start/End: Original strand, 31351980 - 31352255
Alignment:
| Q |
42 |
cactgcaacttaaatcttgaaaaaatgtcctaataagaagttgaagacaatggttcatgagaaagggtggttagaaggaaagcatgatgtcactcat--t |
139 |
Q |
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| T |
31351980 |
cactgcaacttaaatcttgaaaaaatgtcctaataagaagttgaagacaatggttcatgagaaagggtggttagaaggaaagcatgatgtcactcatatt |
31352079 |
T |
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| Q |
140 |
ttagagtatttgattctttatgctatgagaacataccagatgctaagagaaataaattggaagacaagagtgaaccaattattctacatcatttttcttg |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
31352080 |
ttagagtatttgattctttatgctatgagaacataccagatgctaagagaaataaattggaagacaagagtgaaccaattattctacatcttttttcttg |
31352179 |
T |
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| Q |
240 |
aattgttgcattgaagcatttacaataattcatattgcattctcaatgactataatcgaaccctcttcacctttgc |
315 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31352180 |
aattgttgcattgaagcatttagaataattcatattgcattctcaatgactataatcgaaccctcttcacctttgc |
31352255 |
T |
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