View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15289_low_2 (Length: 297)
Name: NF15289_low_2
Description: NF15289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15289_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 12 - 281
Target Start/End: Original strand, 8035875 - 8036144
Alignment:
| Q |
12 |
acagatgatatagtcaaattggatagtgtctgattagatatgcagaggacttgtgcatcctcaatcaaagaacagctatcgagaaccaaaatattcaaca |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8035875 |
acagatgatatagtcaaattggatagtgtctgattagatatgcagaggacttgtgcatcctcaatcaaagaacagctatcgagaaccaaaatattcaaca |
8035974 |
T |
|
| Q |
112 |
catgacagttttgaaaggggtcagcacaatgattgtgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagtgaagagattt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8035975 |
catgacagttttgaaaggggtcagcacaatgattgtgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagtgaagagattt |
8036074 |
T |
|
| Q |
212 |
tggacactttgtatctgtgttattcctactataacaaagatcaagaaatgtcaaagagtgagagccaaag |
281 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
8036075 |
tggacactttgtatccgtgttattcctactataacaaagatcaagaaatgtcaaagaatgagagccaaag |
8036144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 20 - 281
Target Start/End: Original strand, 8041297 - 8041561
Alignment:
| Q |
20 |
tatagtcaaattggatagtgtctgattagatatgcagaggacttgtgcatcctcaatcaaagaacagctatcgagaaccaaaatattcaacacatgacag |
119 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
8041297 |
tatagtcaaattggataatgtctgattagatatgcagaggacttgtgcatcctcaatcaaagaacagctatcgagaaccaaaatattcaacacgtgacag |
8041396 |
T |
|
| Q |
120 |
ttttgaaaggggtcagcacaatgattgtgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagtgaagagattttggacact |
219 |
Q |
| |
|
||| |||| |||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
8041397 |
tttggaaaagggtcagcacaatgattgtgagttgcaacaaatctgaaaaaattaagatgcaaggttcttaatgcaggtaagtgaagagattttggacact |
8041496 |
T |
|
| Q |
220 |
ttgtatctgtgttattcctact---ataacaaagatcaagaaatgtcaaagagtgagagccaaag |
281 |
Q |
| |
|
||| || || || || ||| ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
8041497 |
ttgcatacccgtcataccaactataataacaaagctcaagaaatgtcaaagagtgagagccaaag |
8041561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 18 - 281
Target Start/End: Complemental strand, 8416905 - 8416639
Alignment:
| Q |
18 |
gatatagtcaaattggatagtgtctgattagatatgcagaggacttgtgcatcctcaatcaaagaacagctatcgagaaccaaaatattcaacacatgac |
117 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | | || ||||||| |||||| |||||||| |
|
|
| T |
8416905 |
gatatagtcaaattggataatgtctgattagatatgcagaggacttgtgcatcctcaatcaaagaacaaccactgataaccaaagtattcagcacatgac |
8416806 |
T |
|
| Q |
118 |
agttttgaaaggggtcagcacaatgattgtgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagtgaagagattttggaca |
217 |
Q |
| |
|
||||| |||||| ||||||||||||| ||||||||||||||| || ||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
8416805 |
agtttgaaaagggctcagcacaatgatcgtgagttgcaacaaagttaaaaaatttaagatgcaaggttcttaatgcaggtaagtgaagagattttggaca |
8416706 |
T |
|
| Q |
218 |
ctttgtatctgtgttattcctact---ataacaaagatcaagaaatgtcaaagagtgagagccaaag |
281 |
Q |
| |
|
||| | || || || |||||| |||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
8416705 |
cttcgcataccagtcatacctactataataagaaagctcaagaaatgtcaaagagtgagagccaaag |
8416639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 20 - 281
Target Start/End: Original strand, 9138481 - 9138742
Alignment:
| Q |
20 |
tatagtcaaattggatagtgtctgattagatatgcagaggacttgtgcatcctcaatcaaagaaca-gctatcgagaaccaaaatattcaacacatgaca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||| |||||||||| ||||| |
|
|
| T |
9138481 |
tatagtcaaattggatagtgtctgattagatatgcagaggacttgtgcatcctcaatcaaagaacaagcaat-gagaaccaaagtattcaacacgtgaca |
9138579 |
T |
|
| Q |
119 |
gttttgaaaggggtcagcacaatgattgtgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagtgaagagattttggacac |
218 |
Q |
| |
|
|||| |||||||||||||||| |||| ||||||||||||||| | ||| ||| ||||||||||||||||||||| || | ||||||||||||||||||| |
|
|
| T |
9138580 |
gtttggaaaggggtcagcacagtgatcgtgagttgcaacaaagtggaaccattgaagatgcaaggttcttaatgctggtatgtgaagagattttggacac |
9138679 |
T |
|
| Q |
219 |
tttgtatctgtgttattcctactataacaaagatcaagaaatgtcaaagagtgagagccaaag |
281 |
Q |
| |
|
|||| || ||| ||| ||| |||| |||| |||||||||||||||||| ||||||||||| |
|
|
| T |
9138680 |
tttgcatacccgtttttcatacaataagaaaggtcaagaaatgtcaaagagcgagagccaaag |
9138742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 20 - 281
Target Start/End: Complemental strand, 8411301 - 8411037
Alignment:
| Q |
20 |
tatagtcaaattggatagtgtctgattagatatgcagaggacttgtgcatcctcaatcaaagaacagctatc-gagaaccaaaatattcaacacatgaca |
118 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||| || | ||| |||||| | |||| ||||||||| |
|
|
| T |
8411301 |
tatagtcaaactggataatgtctgattagatatgcagaggacttgtgcatcttcaatcaaagaacaa-tacctgagcaccaaagtcttcagcacatgaca |
8411203 |
T |
|
| Q |
119 |
gttttgaaaggggtcagcacaatgattgtgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagtgaagagattttggacac |
218 |
Q |
| |
|
||| |||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
8411202 |
ttttggaaaagggtcagcacaatgattgtgagttgcaacaaagttgaaaaatttaagatgcaaggttcttaatgcaggtaagtgaagagattttggacac |
8411103 |
T |
|
| Q |
219 |
tttgtatctgtgttattcctact---ataacaaagatcaagaaatgtcaaagagtgagagccaaag |
281 |
Q |
| |
|
|||| || || || |||||| ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
8411102 |
tttgcatgcccgtcatacctactataataacaaagctcaagaaatgtcaaagagtgagagccaaag |
8411037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 18 - 281
Target Start/End: Original strand, 8359045 - 8359302
Alignment:
| Q |
18 |
gatatagtcaaattggatagtgtctgattagatatgcagaggacttgtgcatcctcaatcaaagaacagctatcgagaaccaaaatattcaacacatgac |
117 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||| | ||| |||| | ||||||||||||| |
|
|
| T |
8359045 |
gatatagtcaaattggataatgtctgattagatatgcagaggatttgtgcatcatcaatcaaagaacaatacttgagctgcaaagtgttcaacacatgac |
8359144 |
T |
|
| Q |
118 |
agttttgaaaggggtcagcacaatgattgtgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagtgaagagattttggaca |
217 |
Q |
| |
|
||||| ||||||||||||||| |||| |||||||| |||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8359145 |
agtttgaaaaggggtcagcacagtgatagtgagttgtaacaaagttgaagcatttaagatgcaaggttcttaatgcaggcaggtgaagagattttggaca |
8359244 |
T |
|
| Q |
218 |
ctttgtatctgtgttattcctactataacaaagatcaagaaatgtcaaagagtgagagccaaag |
281 |
Q |
| |
|
||| | || |||| |||| || |||| |||||||||||||||||||||||||||||| |
|
|
| T |
8359245 |
cttcgcatacccgtta-----acta-aagaaagctcaagaaatgtcaaagagtgagagccaaag |
8359302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 141 - 281
Target Start/End: Original strand, 8354614 - 8354754
Alignment:
| Q |
141 |
tgattgtgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagtgaagagattttggacactttgtatctgtgttattcctac |
240 |
Q |
| |
|
|||| ||||||||||||||| |||| | |||| |||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
8354614 |
tgatggtgagttgcaacaaagttgacacatttgagatgcaaggttcttactgcaggcaagtgaagagattttggacactttgtctccgtgttattcctac |
8354713 |
T |
|
| Q |
241 |
tataacaaagatcaagaaatgtcaaagagtgagagccaaag |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8354714 |
tataacaaagatcaagaaatgtcaaagagtgagagccaaag |
8354754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 8404254 - 8404062
Alignment:
| Q |
19 |
atatagtcaaattggatagtgtctgattagatatgcagaggacttgtgcatcctcaatcaaagaacagctatcgagaaccaaaatattcaacacatgaca |
118 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||| |||||||| ||||| |
|
|
| T |
8404254 |
atatagtcaaactggacagtgtctgattagatatgcagaggacttgtgcatcctcaatcaaatcacaaaacctgagcaccaaagtattcaacgcatgaag |
8404155 |
T |
|
| Q |
119 |
gttttgaaaggggtcagcacaatgattgtgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagtgaagagattt |
211 |
Q |
| |
|
|||| |||||| ||| || | |||| ||||||||||||||| |||| |||| |||||| || ||||||||| ||||||| |||| |||||| |
|
|
| T |
8404154 |
gtttgaaaagggatcaacatagtgatcgtgagttgcaacaaagttgacgtattcaagatgtaaagttcttaatacaggcaaatgaaaagattt |
8404062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 12 - 218
Target Start/End: Original strand, 43144349 - 43144555
Alignment:
| Q |
12 |
acagatgatatagtcaaattggatagtgtctgattagatatgcagaggacttgtgcatcctcaatcaaagaacagctatcgagaaccaaaatattcaaca |
111 |
Q |
| |
|
||||| |||||||| ||| |||| |||| | |||||||||||| ||||||| |||||||| |||||||||||| || |||||| |||| ||| |
|
|
| T |
43144349 |
acagaagatatagttaaactggaaagtgcattattagatatgcaaaggacttttgcatcctgaatcaaagaacaatccctaagtaccaaattatttaact |
43144448 |
T |
|
| Q |
112 |
catgacagttttgaaaggggtcagcacaatgattgtgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagtgaagagattt |
211 |
Q |
| |
|
||||||||||| ||| ||||||||| | |||| ||| ||||||||||| |||| |||||| |||| ||| |||||||||||||||||| | |||||||| |
|
|
| T |
43144449 |
catgacagtttgaaaaagggtcagcatagtgatggtgtgttgcaacaaagttgacatatttgagatacaaagttcttaatgcaggcaagcgtagagattt |
43144548 |
T |
|
| Q |
212 |
tggacac |
218 |
Q |
| |
|
||||||| |
|
|
| T |
43144549 |
tggacac |
43144555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 46 - 218
Target Start/End: Original strand, 8356024 - 8356196
Alignment:
| Q |
46 |
tagatatgcagaggacttgtgcatcctcaatcaaagaacagctatcgagaaccaaaatattcaacacatgacagttttgaaaggggtcagcacaatgatt |
145 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||| ||| ||| || |||||| |||| ||| ||||||||||| ||| ||||| ||| | |||| |
|
|
| T |
8356024 |
tagatatgcaaaggacttgtgcgtcctcaatcaatttacaatcatcaagtaccaaagtatttaactcatgacagtttgaaaaagggtcggcatagtgatg |
8356123 |
T |
|
| Q |
146 |
gtgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagtgaagagattttggacac |
218 |
Q |
| |
|
||||||||||||||| |||| | ||| |||||||| |||||||||||||| || |||||||||||||||||| |
|
|
| T |
8356124 |
gtgagttgcaacaaagttgacacattcgagatgcaaagttcttaatgcaggaaattgaagagattttggacac |
8356196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 23 - 201
Target Start/End: Original strand, 9576894 - 9577072
Alignment:
| Q |
23 |
agtcaaattggatagtgtctgattagatatgcagaggacttgtgcatcctcaatcaaagaacagctatcgagaaccaaaatattcaacacatgacagttt |
122 |
Q |
| |
|
|||||||| || ||||| | ||||||||||||||||||||||| |||| ||||||| |||| | |||| ||||| |||||||||| ||||||| |
|
|
| T |
9576894 |
agtcaaatgtgaaagtgtataattagatatgcagaggacttgtgtttccttaatcaaacaacaataaccgagcaccaatgtattcaacacgagacagttc |
9576993 |
T |
|
| Q |
123 |
tgaaaggggtcagcacaatgattgtgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagt |
201 |
Q |
| |
|
|||||| |||||||| ||| ||| ||||||| |||| | ||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
9576994 |
gaaaagggatcagcacagtgactgttagttgcagcaaagtagaagtattcaagatgcaaggttcttaatgcaggcaagt |
9577072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 19 - 281
Target Start/End: Complemental strand, 33084454 - 33084201
Alignment:
| Q |
19 |
atatagtcaaattggatagtgtctgattagatatgcagaggacttgtgcatcctcaatcaaagaacagctatcgagaaccaaaatattcaacacatgaca |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| | | |||||||||| |||||||||| ||||| |
|
|
| T |
33084454 |
atatagtcaaattggatagtgtctgattagacatgtagaggacttgtgcatcctcaatcaaagaacaaccactgagaaccaaagtattcaacacgtgaca |
33084355 |
T |
|
| Q |
119 |
gttttgaaaggggtcagcacaatgattgtgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagtgaagagattttggacac |
218 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| || |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33084354 |
gtttggaaaggggtcagcacaatgattgtgagttgcaaagaagttgaaaaattgaagatgcaaggttcttaatgcaggcaagtgaagagattttggacac |
33084255 |
T |
|
| Q |
219 |
tttgtatctgtgttattcctactataacaaagatcaagaaatgtcaaagagtgagagccaaag |
281 |
Q |
| |
|
|||| |||||||| |||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
33084254 |
tttg---------cattcctaccataagaaagctcaagaaatgtcaaagagtgagagccaaag |
33084201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 47 - 235
Target Start/End: Complemental strand, 24845504 - 24845317
Alignment:
| Q |
47 |
agatatgcagaggacttgtgcatcctcaatcaaagaacagctatcgagaaccaaaatattcaacacatgacagttttgaaaggggtcagcacaatgattg |
146 |
Q |
| |
|
||||||||| |||| ||||||||||||| |||| || || | | || || ||| |||| ||||||||||||||| |||| |||||||| | |||| | |
|
|
| T |
24845504 |
agatatgcaaaggatttgtgcatcctcactcaatgagcacccagtaagtactaaagtatttaacacatgacagttt-gaaaaaggtcagcatagtgatgg |
24845406 |
T |
|
| Q |
147 |
tgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagtgaagagattttggacactttgtatctgtgttatt |
235 |
Q |
| |
|
|||||||| ||||| |||| | |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
24845405 |
tgagttgctacaaagttgacacatttgagatgcaaggttcttactgcaggcaagtgaagagattttggacactttgtatccgtgttatt |
24845317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 228 - 281
Target Start/End: Complemental strand, 24844665 - 24844612
Alignment:
| Q |
228 |
gtgttattcctactataacaaagatcaagaaatgtcaaagagtgagagccaaag |
281 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
24844665 |
gtgttattcctactataagaaagatcaagaaatgtcaaagaatgagagccaaag |
24844612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 5476802 - 5476606
Alignment:
| Q |
19 |
atatagtcaaattggatagtgtctgattagatatgcagaggacttgtgcatcctcaatcaaagaacagctatcgagaaccaaaatattcaacacatgaca |
118 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||| | ||| |||||| |||||||| ||||| |
|
|
| T |
5476802 |
atatagtcaaattggacagtgtctgattagatatgcagaggactagtgcatcctcaatcaaataacaacacctgagcaccaaagtattcaacgcatgaag |
5476703 |
T |
|
| Q |
119 |
gttttgaaaggggtcagcacaatgattgtgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagtgaagagattttgga |
215 |
Q |
| |
|
|||| |||||| ||| || | |||| | ||||||||||||| |||| |||| |||||| || ||||||||||||||||| || |||||||||||| |
|
|
| T |
5476702 |
gtttgaaaagggatcaacatagtgatcgcgagttgcaacaaagttgacgtattcaagatgtaaagttcttaatgcaggcaaatgtagagattttgga |
5476606 |
T |
|
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