View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1528_high_3 (Length: 303)
Name: NF1528_high_3
Description: NF1528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1528_high_3 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 11 - 303
Target Start/End: Complemental strand, 40330663 - 40330373
Alignment:
| Q |
11 |
agaatatgattgggcaaacagaggatgataaaaatatataaaaggggccaagcagaggacaagacaaactgttcaggtaggtccaaatgacggcaaaccc |
110 |
Q |
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| T |
40330663 |
agaaaatgattgggcaaacagaggatgataaaaata----aaaggggccaagcagaggacaagacaaactgtttaggtaggtccaaatgacggcaaaccc |
40330568 |
T |
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| Q |
111 |
ttagctgtatagaaagcaatgttataagttttaacatcttccattttaattggacaatgaactgattgattattctcttctttttcctttcccttaattt |
210 |
Q |
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| T |
40330567 |
ttagctgtatagaaagcaatgttatatgttttaacatcttccattttaattggacaatgaactgatttattattctcttctttttcctttcccttaattt |
40330468 |
T |
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| Q |
211 |
tctttccaaaacttcatgtata--tatagaccctactctcatttccattccacaatcaaatattttcttcatcaaacacattcatataatacaca |
303 |
Q |
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| T |
40330467 |
tctttccaaaacttcatgtatatatatagaccctactctcatttccattccacaatcaaatattttcttcatcaaacacattcatataatacaca |
40330373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 51 - 202
Target Start/End: Complemental strand, 40311049 - 40310903
Alignment:
| Q |
51 |
aaaggggccaagcagaggacaagacaaactgttcaggtaggtccaaatgacggcaaacccttagctgtatagaaagcaatgttataagttttaacatctt |
150 |
Q |
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| T |
40311049 |
aaaggggccaagcagaggacaa-----actgcttaggtaggtcctaatgacttcaagcccttagctgtatagaaagcaatgttatatgttttaacatctt |
40310955 |
T |
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| Q |
151 |
ccattttaattggacaatgaactgattgattattctcttctttttcctttcc |
202 |
Q |
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| T |
40310954 |
ccatttcaatgagacaatgaactgattgattattcttttctttttcctttcc |
40310903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 51 - 202
Target Start/End: Complemental strand, 40321125 - 40320979
Alignment:
| Q |
51 |
aaaggggccaagcagaggacaagacaaactgttcaggtaggtccaaatgacggcaaacccttagctgtatagaaagcaatgttataagttttaacatctt |
150 |
Q |
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| T |
40321125 |
aaaggggccaagcagaggacaa-----actgcttaggtaggtcctaatgacttcaagcccttagctgtatagaaagcaatgttatatgttttaacatctt |
40321031 |
T |
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| Q |
151 |
ccattttaattggacaatgaactgattgattattctcttctttttcctttcc |
202 |
Q |
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| T |
40321030 |
ccatttcaatgagacaatgaactgattgattattcttttctttttcctttcc |
40320979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 85 - 202
Target Start/End: Complemental strand, 40314000 - 40313879
Alignment:
| Q |
85 |
aggtaggtccaaatgacggcaaacccttagctgtatagaaagcaat----gttataagttttaacatcttccattttaattggacaatgaactgattgat |
180 |
Q |
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| T |
40314000 |
aggtaggtcctaaggtcggcaagcacttagctgtatagaaagcaatatatgttatatgttttaacatcttccatttcaatgagacaatgaactgattgat |
40313901 |
T |
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| Q |
181 |
tattctcttctttttcctttcc |
202 |
Q |
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| T |
40313900 |
tattctcttcgttttcctttcc |
40313879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 85 - 202
Target Start/End: Complemental strand, 40324076 - 40323955
Alignment:
| Q |
85 |
aggtaggtccaaatgacggcaaacccttagctgtatagaaagcaat----gttataagttttaacatcttccattttaattggacaatgaactgattgat |
180 |
Q |
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| T |
40324076 |
aggtaggtcctaaggtcggcaagcacttagctgtatagaaagcaatatatgttatatgttttaacatcttccatttcaatgagacaatgaactgattgat |
40323977 |
T |
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| Q |
181 |
tattctcttctttttcctttcc |
202 |
Q |
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| T |
40323976 |
tattctcttcgttttcctttcc |
40323955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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