View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1528_low_1 (Length: 1370)
Name: NF1528_low_1
Description: NF1528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1528_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 469; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 74 - 668
Target Start/End: Complemental strand, 52003007 - 52002405
Alignment:
| Q |
74 |
ctctaaatataagactcaattatttattagaagaccttttcaaatatttctttgcattattttctgtgacagcagaaacatccttaattatttgataaat |
173 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||| |
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| T |
52003007 |
ctctaaatataagactcaattatttattagaagaccttttcaaatatttctttgcattattttctgtgatag---aaacattcttaattatttgataaat |
52002911 |
T |
|
| Q |
174 |
ttgtgtagtcattaattagtttaagaaataaacattgcaacagacaagatcgactatctctgacttgtaaggatcaggatcnnnnnnnnnnn-------- |
265 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52002910 |
ttgtgtagtcattaattagtttaagaaataaacattgcaacagacaagatcgactatctctgacttgtaaggatcaggatcttttttttttttttttttt |
52002811 |
T |
|
| Q |
266 |
---ctgtttacaataggaatatggatatattatggtgaataaggtggagtgagtaagatatcgagtccaataattaagtaggtaattttagtggtaagaa |
362 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
52002810 |
tttctgtttacaataggaatatggatatattatggtgaacaaggtggagtgaataagatatcgagtccactaattaagtaggtaattttagtggtaagaa |
52002711 |
T |
|
| Q |
363 |
attgaccttatcgttttaaattacaaatttcaaaatgaaggtgttaattccaactttcaaaatgatagatgaacactcactttttatacaccatcacaca |
462 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
52002710 |
attgaccttatcgttttaaattacaaatttcaaaatgaaggtgttaattccaactttcaaaatgatagatgaacactcactttttatacaccttcacaca |
52002611 |
T |
|
| Q |
463 |
actaactaatcacacgttaaaaaatctggttaatttgaattacaaacaaaactgtagttaattgaactacataaattaactgtaagtcatactcttcaca |
562 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||| |
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| T |
52002610 |
actaactaatcacacgttaaaaaatctggttaatttgatttacaaacaaaactgtagttaattgaactacataaattaacagtaagtcgtactctttaca |
52002511 |
T |
|
| Q |
563 |
tagaagatgagagaatcactcatgagcctcatgtcttttgaaccatatgatagatagcaaggtcatatgttcgattttgtcgttcaatgtcataataaat |
662 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
52002510 |
tagaagatgagagaatcactcatgagcctcatgtcttttgaaccatatgatagatagtaaggtcatatgtacgattttgttgttcaatgtcataataaat |
52002411 |
T |
|
| Q |
663 |
agttgg |
668 |
Q |
| |
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|||||| |
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| T |
52002410 |
agttgg |
52002405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 703 - 1082
Target Start/End: Complemental strand, 52002381 - 52002002
Alignment:
| Q |
703 |
gcatccatcaaactaattaaatattttaacacattgtagtagattttgatcaaccaatttagcgcgggaaaacaagaataagaaacagaaaatggaccca |
802 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52002381 |
gcatccatcaaactaattaaatattttaacacattgtagtagattttgatcaaccaatttagcgcgggaaaacaagaataagaaacagaaaatggaccca |
52002282 |
T |
|
| Q |
803 |
cccaatcccaacgaagcccctcccattgaggatataacttctatcacagaacaactaaagggccacggtttttccaacaaagaaattggtgcaatccttg |
902 |
Q |
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|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52002281 |
cccaatcccaacgatgtccctcccattgaggatataacttctatcacagaacaactaaagggccacggtttttccaacaaagaaattggtgcaatcctta |
52002182 |
T |
|
| Q |
903 |
ccttatccccatcaacatatgttcctgaatctcccaatcatattcatagagatgaaagaccacatgaaccctttctcaagagaggaactgaacccgactc |
1002 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
52002181 |
ccttagccccatcaacatatgttcctgaatctcccaatcatattcatagagatgaaagaccacatgaaccctttctcaagagaggaacggaacccgactc |
52002082 |
T |
|
| Q |
1003 |
cgatgatgcctcttcttctaaacgcacaaaactctacaactttgaaaacacttccgatccaaaaggaaagaaaccactca |
1082 |
Q |
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| T |
52002081 |
cgatgatgcctcttcttctaaacgcacaaaactctacaactttgaaaacacttctgatccaaaaggaaagaaaccactca |
52002002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1114 - 1348
Target Start/End: Complemental strand, 52002003 - 52001769
Alignment:
| Q |
1114 |
cattgatgatcatcatcagaggaaggaaataccagaaaatcaaatacctttggcttttgatatcaatgcttataatattaacagcgaaactgaaactgat |
1213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52002003 |
cattgatgatcatcatcagaggaaggaaataccagaaaatcaactacctttggcttttgatatcaatgcttataatattaacagcgaaactgaaactgat |
52001904 |
T |
|
| Q |
1214 |
gatagcgacaacgatgatgattttgagatttgtaggaacgagtcatttattagaagtcagtacaagctatttaacaaagacactgcaaagagatttgcgt |
1313 |
Q |
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| T |
52001903 |
gatagcgacaacgatgatgattttgagatttgtaggaacgagtcatttattagaagtcagtacaagctatttaacaaagacactgcaaagagatttgcgt |
52001804 |
T |
|
| Q |
1314 |
cacgcattcatagtgtttcagagaataaagaaaaa |
1348 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
52001803 |
cacgcattcatagtgtttcagagaataaagaaaaa |
52001769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1128 - 1221
Target Start/End: Complemental strand, 52011878 - 52011785
Alignment:
| Q |
1128 |
atcagaggaaggaaataccagaaaatcaaatacctttggcttttgatatcaatgcttataatattaacagcgaaactgaaactgatgatagcga |
1221 |
Q |
| |
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||||||||||||||||| |||||||||||||| | ||| ||| ||||| |||| |||| |||| || |||||||||||| |||||||||| |
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| T |
52011878 |
atcagaggaaggaaataacagaaaatcaaatatcactggatttggatattaatgactatatcattaccaatgaaactgaaactaatgatagcga |
52011785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 841 - 892
Target Start/End: Complemental strand, 52012216 - 52012165
Alignment:
| Q |
841 |
ttctatcacagaacaactaaagggccacggtttttccaacaaagaaattggt |
892 |
Q |
| |
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|||| ||||| ||||||| ||||| |||||||||||| |||||||||||||| |
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|
| T |
52012216 |
ttctgtcacaaaacaactcaagggtcacggtttttccgacaaagaaattggt |
52012165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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