View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1528_low_10 (Length: 394)
Name: NF1528_low_10
Description: NF1528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1528_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 147 - 301
Target Start/End: Complemental strand, 42679304 - 42679152
Alignment:
| Q |
147 |
gtgaaagcagaagaaacaagcacaaataaattgtttgtgcgctgagcagaaactatacaaaaccagaacaaagatatgaattttaatttaaaagagaaat |
246 |
Q |
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| T |
42679304 |
gtgaaagcagaagaaacaagcacaaataaattgtttgtgcgctgagcagaaactatacaaaaccagaacaaagatatgaattttaatttaaaagagaaat |
42679205 |
T |
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| Q |
247 |
nnnnnnnnnnnnngtaagcatgttgatattatattgtcagaaacaattaaaacat |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
42679204 |
--aaaaaaaaaaagtaagcatgttgatattatattgtcagaaacaattaaaacat |
42679152 |
T |
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