View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1528_low_11 (Length: 366)

Name: NF1528_low_11
Description: NF1528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1528_low_11
NF1528_low_11
[»] chr3 (12 HSPs)
chr3 (1-223)||(2837995-2838217)
chr3 (1-222)||(2855206-2855427)
chr3 (1-222)||(2749516-2749737)
chr3 (1-222)||(2819078-2819299)
chr3 (1-222)||(2759735-2759956)
chr3 (1-222)||(5413407-5413628)
chr3 (1-220)||(2769590-2769809)
chr3 (1-222)||(2807788-2808009)
chr3 (1-220)||(2790841-2791060)
chr3 (1-223)||(2797882-2798104)
chr3 (105-180)||(3220909-3220984)
chr3 (104-160)||(3310091-3310147)
[»] scaffold0691 (1 HSPs)
scaffold0691 (1-222)||(5548-5769)
[»] chr1 (1 HSPs)
chr1 (101-148)||(11116893-11116940)


Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 2838217 - 2837995
Alignment:
Q  1 atgggaactcttctgtaagaaagtatttagatttgaacctggtgggcattgtccaccagagcttaaggctgtgtcaaaagaaattgttcaaaaatgcaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2838217 atgggaactcttctgtaagaaagtatttagatttgaacctggtgggcattgtccaccagagcttaaggctgtgtcaaaagaaattgttcaaaaatgcaag 2838118  T
Q  101 cagctacctctggcaattgtagccattggtggtctactttcaacaaaatctaaaaccatgattgaatggcaaaaagtgagtgaaaatatgagactggaat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  2838117 cagctacctctggcaattgtagccattggtggtctactttcaacaaaatctaaaacaatgattgaatggcaaaacgtgagtgaaaatatgagactggaat 2838018  T
Q  201 tgggacgtaatgcccatttaact 223  Q
    |||||||||||||||||||||||    
T  2838017 tgggacgtaatgcccatttaact 2837995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 2855427 - 2855206
Alignment:
Q  1 atgggaactcttctgtaagaaagtatttagatttgaacctggtgggcattgtccaccagagcttaaggctgtgtcaaaagaaattgttcaaaaatgcaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  2855427 atgggaactcttctgtaagaaagtatttagatttgaacctggtgggcattgtccaccagagcttgaggctgtgtcaaaagaaattgttctaaaatgcaag 2855328  T
Q  101 cagctacctctggcaattgtagccattggtggtctactttcaacaaaatctaaaaccatgattgaatggcaaaaagtgagtgaaaatatgagactggaat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||    
T  2855327 cagctacctctggcaattgtagccattggtggtctactttcaacaaaatctaaaacaatgattgaatggcaaaacgtgagtgaaaatatgagattggaat 2855228  T
Q  201 tgggacgtaatgcccatttaac 222  Q
    ||||||||||||||||||||||    
T  2855227 tgggacgtaatgcccatttaac 2855206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 2749516 - 2749737
Alignment:
Q  1 atgggaactcttctgtaagaaagtatttagatttgaacctggtgggcattgtccaccagagcttaaggctgtgtcaaaagaaattgttcaaaaatgcaag 100  Q
    ||||||||| ||||| |||| ||||||||||| ||| | |||||| ||||||||| |||| ||| |||||||||||||||||||||||||||| |||| |    
T  2749516 atgggaacttttctgcaagagagtatttagatatgagcttggtggacattgtccatcagaacttgaggctgtgtcaaaagaaattgttcaaaagtgcagg 2749615  T
Q  101 cagctacctctggcaattgtagccattggtggtctactttcaacaaaatctaaaaccatgattgaatggcaaaaagtgagtgaaaatatgagactggaat 200  Q
    ||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||| |||||||    
T  2749616 cagctacctctagcaattgtagctattggtggtttactttcaacaaaatctaaaacaatgattgaatggcaaaaggtgagtgaaaatctgagtctggaat 2749715  T
Q  201 tgggacgtaatgcccatttaac 222  Q
    | ||||||||||||||||||||    
T  2749716 taggacgtaatgcccatttaac 2749737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 2819078 - 2819299
Alignment:
Q  1 atgggaactcttctgtaagaaagtatttagatttgaacctggtgggcattgtccaccagagcttaaggctgtgtcaaaagaaattgttcaaaaatgcaag 100  Q
    ||||||||||||||| |||||||||||||| | ||| | |||||| | ||||||||| || ||| ||| |||| ||||||||||||||||||||| ||||    
T  2819078 atgggaactcttctgcaagaaagtatttaggtctgagcttggtggtcgttgtccaccggaacttgaggttgtggcaaaagaaattgttcaaaaattcaag 2819177  T
Q  101 cagctacctctggcaattgtagccattggtggtctactttcaacaaaatctaaaaccatgattgaatggcaaaaagtgagtgaaaatatgagactggaat 200  Q
    ||  ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||| |||| ||||| |    
T  2819178 caattacctttggcaatcgtagccattggtggtctactttcaacaaaatctaaaaccatgatcgaatggcaaaaggtgagtcaaaatttgagcctggagt 2819277  T
Q  201 tgggacgtaatgcccatttaac 222  Q
    ||| ||||||||||||||||||    
T  2819278 tggaacgtaatgcccatttaac 2819299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 2759735 - 2759956
Alignment:
Q  1 atgggaactcttctgtaagaaagtatttagatttgaacctggtgggcattgtccaccagagcttaaggctgtgtcaaaagaaattgttcaaaaatgcaag 100  Q
    ||||||||||||||| |||||||||||||||| ||| | ||| |||| ||||||||| |||||| |||||||| ||||||||||||| ||||| | ||||    
T  2759735 atgggaactcttctgcaagaaagtatttagatatgatcttggagggcgttgtccaccggagcttgaggctgtggcaaaagaaattgtgcaaaagttcaag 2759834  T
Q  101 cagctacctctggcaattgtagccattggtggtctactttcaacaaaatctaaaaccatgattgaatggcaaaaagtgagtgaaaatatgagactggaat 200  Q
    || |||||||| |||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||| ||||| |    
T  2759835 caactacctcttgcaattgtggccgttgctggtctactttcaacaaaatctaaaaccatgattgaatggcaaaaggtgagtcaaaatttgagcctggagt 2759934  T
Q  201 tgggacgtaatgcccatttaac 222  Q
    ||||  ||||| ||||||||||    
T  2759935 tggggtgtaatacccatttaac 2759956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 5413407 - 5413628
Alignment:
Q  1 atgggaactcttctgtaagaaagtatttagatttgaacctggtgggcattgtccaccagagcttaaggctgtgtcaaaagaaattgttcaaaaatgcaag 100  Q
    ||||||||| | ||| ||||| || ||| ||||||||| ||||||| |||||||| | |||||| ||| ||| || ||||||||||||| ||||||||||    
T  5413407 atgggaactttactgcaagaaggtgtttggatttgaacttggtgggaattgtccatcggagcttcaggatgtatcgaaagaaattgttcgaaaatgcaag 5413506  T
Q  101 cagctacctctggcaattgtagccattggtggtctactttcaacaaaatctaaaaccatgattgaatggcaaaaagtgagtgaaaatatgagactggaat 200  Q
    ||||| ||||| | |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||| ||||| |||| |||||||    
T  5413507 cagcttcctctagaaattgtagccattggtggtctactttcaacaaaatctaaaacaattattgaatggcaaaaggtgagtcaaaatctgagcctggaat 5413606  T
Q  201 tgggacgtaatgcccatttaac 222  Q
    | ||||||||||||||||||||    
T  5413607 taggacgtaatgcccatttaac 5413628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 2769590 - 2769809
Alignment:
Q  1 atgggaactcttctgtaagaaagtatttagatttgaacctggtgggcattgtccaccagagcttaaggctgtgtcaaaagaaattgttcaaaaatgcaag 100  Q
    ||||||||||||||| ||||||| ||| |||||||||| || |||||| ||||||||||||||| || |  |||| ||||||||||||| ||||||||||    
T  2769590 atgggaactcttctgcaagaaagcattcagatttgaacttgatgggcaatgtccaccagagcttcagtccatgtctaaagaaattgttcgaaaatgcaag 2769689  T
Q  101 cagctacctctggcaattgtagccattggtggtctactttcaacaaaatctaaaaccatgattgaatggcaaaaagtgagtgaaaatatgagactggaat 200  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |  | |||||||||||| |||||| ||||  | |  ||||| |    
T  2769690 cagctacctctggcaattgtagccattggtggtctattttcaacaaaatctaaaacaagaactgaatggcaaaaggtgagtcaaaagctaaacctggagt 2769789  T
Q  201 tgggacgtaatgcccattta 220  Q
    ||||||||||||||||||||    
T  2769790 tgggacgtaatgcccattta 2769809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 2807788 - 2808009
Alignment:
Q  1 atgggaactcttctgtaagaaagtatttagatttgaacctggtgggcattgtccaccagagcttaaggctgtgtcaaaagaaattgttcaaaaatgcaag 100  Q
    ||||||||||||||| ||||||||||||||||| || | || |||||| |||||||| |||||| ||||| |||||| ||| ||||||| ||||||||||    
T  2807788 atgggaactcttctgcaagaaagtatttagattcgatcttgatgggcactgtccaccggagcttgaggctatgtcaatagatattgttcgaaaatgcaag 2807887  T
Q  101 cagctacctctggcaattgtagccattggtggtctactttcaacaaaatctaaaaccatgattgaatggcaaaaagtgagtgaaaatatgagactggaat 200  Q
    ||||||||| ||||||||||||| ||||| ||||||||||||||||||| |||||| || || |||||| |||| |||||| ||||| ||||  |||| |    
T  2807888 cagctacctttggcaattgtagctattggcggtctactttcaacaaaatataaaacaataatggaatgggaaaaggtgagtcaaaatctgagcttggagt 2807987  T
Q  201 tgggacgtaatgcccatttaac 222  Q
    ||||||||||||||||||||||    
T  2807988 tgggacgtaatgcccatttaac 2808009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 2790841 - 2791060
Alignment:
Q  1 atgggaactcttctgtaagaaagtatttagatttgaacctggtgggcattgtccaccagagcttaaggctgtgtcaaaagaaattgttcaaaaatgcaag 100  Q
    ||||||||||||||| ||||||| ||| |||||||| | ||||||||||||||||||||||||||||    |||||||||||||||||| ||||||||||    
T  2790841 atgggaactcttctgcaagaaagcattcagatttgagcttggtgggcattgtccaccagagcttaagttcatgtcaaaagaaattgttcgaaaatgcaag 2790940  T
Q  101 cagctacctctggcaattgtagccattggtggtctactttcaacaaaatctaaaaccatgattgaatggcaaaaagtgagtgaaaatatgagactggaat 200  Q
    |||||||| ||||||||||||||| |  |||||||||||||||||||| |||||||| ||| ||||||| |||  |||||| ||||  |||  ||||| |    
T  2790941 cagctacccctggcaattgtagccgtcagtggtctactttcaacaaaagctaaaaccgtgactgaatggaaaatggtgagtcaaaacctgaacctggagt 2791040  T
Q  201 tgggacgtaatgcccattta 220  Q
    ||||||||||||||||||||    
T  2791041 tgggacgtaatgcccattta 2791060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 2797882 - 2798104
Alignment:
Q  1 atgggaactcttctgtaagaaagtatttagatttgaacctggtgggcattgtccaccagagcttaaggctgtgtcaaaagaaattgttcaaaaatgcaag 100  Q
    ||||||||||||||| ||||||| ||| ||||||||   |||||||||||||||||||||||||||  |  |||||| |||||| |||| ||||||||||    
T  2797882 atgggaactcttctgcaagaaagcattcagatttgaggttggtgggcattgtccaccagagcttaactccatgtcaatagaaatagttcgaaaatgcaag 2797981  T
Q  101 cagctacctctggcaattgtagccattggtggtctactttcaacaaaatctaaaaccatgattgaatggcaaaaagtgagtgaaaatatgagactggaat 200  Q
    |||||||| ||||||||||||||||||||||||||| |||| |||||| |||||||  ||| ||||||| |||  |||||| ||||| |||  ||||| |    
T  2797982 cagctacccctggcaattgtagccattggtggtctattttcgacaaaagctaaaactgtgactgaatggaaaatggtgagtcaaaatctgaacctggagt 2798081  T
Q  201 tgggacgtaatgcccatttaact 223  Q
    ||||||| |||||||||||||||    
T  2798082 tgggacgcaatgcccatttaact 2798104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 180
Target Start/End: Complemental strand, 3220984 - 3220909
Alignment:
Q  105 tacctctggcaattgtagccattggtggtctactttcaacaaaatctaaaaccatgattgaatggcaaaaagtgag 180  Q
    |||| ||||||||||| ||||||||||||||  | ||||||||||||||||||||  |||| ||| |||| |||||    
T  3220984 taccactggcaattgtggccattggtggtcttttatcaacaaaatctaaaaccatttttgagtgggaaaaggtgag 3220909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 160
Target Start/End: Complemental strand, 3310147 - 3310091
Alignment:
Q  104 ctacctctggcaattgtagccattggtggtctactttcaacaaaatctaaaaccatg 160  Q
    ||||| ||||||||||| |||||||| |||||  | ||||||||| |||||||||||    
T  3310147 ctaccactggcaattgtggccattggaggtcttttgtcaacaaaagctaaaaccatg 3310091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 5769 - 5548
Alignment:
Q  1 atgggaactcttctgtaagaaagtatttagatttgaacctggtgggcattgtccaccagagcttaaggctgtgtcaaaagaaattgttcaaaaatgcaag 100  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||||||||||  |||||| ||||||| ||||||||||||||| |||||||||||    
T  5769 atgggaactcttctgcaaaaaagtatttagatttgaacctggtgggcattgtccacttgagcttgaggctgtatcaaaagaaattgttaaaaaatgcaag 5670  T
Q  101 cagctacctctggcaattgtagccattggtggtctactttcaacaaaatctaaaaccatgattgaatggcaaaaagtgagtgaaaatatgagactggaat 200  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||| ||||| |||| || || |    
T  5669 cagctacctcttgcaattgtagccattggtggtctactttcaacaaaatctaaaacaatggttgaatggcaaaaggtgagtcaaaatttgagcctagagt 5570  T
Q  201 tgggacgtaatgcccatttaac 222  Q
    ||| ||||||||||||||||||    
T  5569 tggaacgtaatgcccatttaac 5548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 148
Target Start/End: Complemental strand, 11116940 - 11116893
Alignment:
Q  101 cagctacctctggcaattgtagccattggtggtctactttcaacaaaa 148  Q
    ||||| ||| |||||||||||||||||||||| |||||||||||||||    
T  11116940 cagcttcctttggcaattgtagccattggtggcctactttcaacaaaa 11116893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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