View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1528_low_13 (Length: 318)
Name: NF1528_low_13
Description: NF1528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1528_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 27 - 310
Target Start/End: Original strand, 34976836 - 34977119
Alignment:
| Q |
27 |
tgtatgcttcaattgaaggatgttttaggatgcatggaatctctacaaacattgactggagtgaaaattggtaaggatggaatagagttaattaaagagt |
126 |
Q |
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| T |
34976836 |
tgtatgcttcaattgaaggatgtgttaggatgcatggaatctttacaaacattgaccggagtgaaaattggtaaggatggaatagagttaattaaagagt |
34976935 |
T |
|
| Q |
127 |
tgggaaagttcagacagttaaggaagttgagcttgttttatgtggcggcagaacattcaagcgctctatcttcctcactgaatgagatgcgacacttgga |
226 |
Q |
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| T |
34976936 |
tgggaaagttcagacagttaaggaagttgagcttgttttatgtaagggcagaacattcaagcgctctatattcctcactgaatgagatgaaacacttgga |
34977035 |
T |
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| Q |
227 |
gaatttatacattgtgtcaggaatgggagacaatatagattttgatgtcattgatttagatttggtttcgcctccacctatgct |
310 |
Q |
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| T |
34977036 |
gaatttatacattgtgtcaggaatgggagacaatatagattttgatgtcattgatttagatttggtttcgcctccacctatgct |
34977119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 34 - 310
Target Start/End: Original strand, 34983890 - 34984166
Alignment:
| Q |
34 |
ttcaattgaaggatgttttaggatgcatggaatctctacaaacattgactggagtgaaaattggtaaggatggaatagagttaattaaagagttgggaaa |
133 |
Q |
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| T |
34983890 |
ttcaattgaaggatgttataggaggcatggaatctctacaaacattgagtggagtgaaaattggtaagggtggaatagagttaattaaagagttgggaaa |
34983989 |
T |
|
| Q |
134 |
gttcagacagttaaggaagttgagcttgttttatgtggcggcagaacattcaagcgctctatcttcctcactgaatgagatgcgacacttggagaattta |
233 |
Q |
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| T |
34983990 |
gctaagacagttaaggaagttgaccttgttttatgcgagggcagaacattttagcgctttatcttcctcattgaatgagatgcgacacttagaaaaatta |
34984089 |
T |
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| Q |
234 |
tacattgtgtcaggaatgggagacaatatagattttgatgtcattgatttagatttggtttcgcctccacctatgct |
310 |
Q |
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| T |
34984090 |
tgcattgtgtcaggatgggaagatggttcttattatgatgtcattgatttacatttggtttcgcctccacctatgct |
34984166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 34 - 310
Target Start/End: Complemental strand, 2304482 - 2304206
Alignment:
| Q |
34 |
ttcaattgaaggatgttttaggatgcatggaatctctacaaacattgactggagtgaaaattggtaaggatggaatagagttaattaaagagttgggaaa |
133 |
Q |
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| T |
2304482 |
ttcaattgaaggatgttataggaggcatggaatctctacaaacattgactggaatgaaaattggtaagggtggaatagagttaattaaagagttgggaaa |
2304383 |
T |
|
| Q |
134 |
gttcagacagttaaggaagttgagcttgttttatgtggcggcagaacattcaagcgctctatcttcctcactgaatgagatgcgacacttggagaattta |
233 |
Q |
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| | || |||||||||||||| ||||||||| ||||| | ||||||||||| |||| |||||||||| |||||||||||||||||| |||||| ||| |
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| T |
2304382 |
gctaaggcagttaaggaagtttagcttgtttgatgtgaggctagaacattcaatcgctttatcttcctcgttgaatgagatgcgacactcggagaaatta |
2304283 |
T |
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| Q |
234 |
tacattgtgtcaggaatgggagacaatatagattttgatgtcattgatttagatttggtttcgcctccacctatgct |
310 |
Q |
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| |||| ||||| ||| ||||| || | ||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
2304282 |
tgcattatgtcaagaagcggagatgatggggtttttgatgtcattgatttacatttggtttcgcttccacctatgct |
2304206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 34 - 245
Target Start/End: Original strand, 34990719 - 34990930
Alignment:
| Q |
34 |
ttcaattgaaggatgttttaggatgcatggaatctctacaaacattgactggagtgaaaattggtaaggatggaatagagttaattaaagagttgggaaa |
133 |
Q |
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|||| |||||||||||| | ||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||| ||||| ||||||||||| |
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| T |
34990719 |
ttcatttgaaggatgttattggatgcatggaatctctacaaacgttgagtggagtgaaaattggtaagggtggaatagagttgattaaggagttgggaaa |
34990818 |
T |
|
| Q |
134 |
gttcagacagttaaggaagttgagcttgttttatgtggcggcagaacattcaagcgctctatcttcctcactgaatgagatgcgacacttggagaattta |
233 |
Q |
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| | || | ||||||||||||||||||| | ||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
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| T |
34990819 |
gctaaggcggttaaggaagttgagcttgaatgatgtgagggcaagacattcaagcgctttatcttcctcactgaatgagatgcgacacttggagaaatta |
34990918 |
T |
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| Q |
234 |
tacattgtgtca |
245 |
Q |
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| T |
34990919 |
cgcattgtgtca |
34990930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 41 - 310
Target Start/End: Original strand, 40581407 - 40581676
Alignment:
| Q |
41 |
gaaggatgttttaggatgcatggaatctctacaaacattgactggagtgaaaattggtaaggatggaatagagttaattaaagagttgggaaagttcaga |
140 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||| ||||| | || |
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| T |
40581407 |
gaaggatgttataggatgcatggaatctctacaaacattgagtgcagtgaaaattggtaagggtggaatagagttaattaaagagttgagaaagctaagg |
40581506 |
T |
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| Q |
141 |
cagttaaggaagttgagcttgttttatgtggcggcagaacattcaagcgctctatcttcctcactgaatgagatgcgacacttggagaatttatacattg |
240 |
Q |
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|||||||||||||||| ||||||||||| | ||||||||||| |||||| ||||||||||| |||||||||||||||||||| | || ||| ||||| |
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| T |
40581507 |
cagttaaggaagttgaacttgttttatgcgagggcagaacattttagcgctttatcttcctcattgaatgagatgcgacacttgaaaaaattaagcattg |
40581606 |
T |
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| Q |
241 |
tgtcaggaatgggagacaatatagattttgatgtcattgatttagatttggtttcgcctccacctatgct |
310 |
Q |
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| T |
40581607 |
tatcaggatggggacaagattttgtttatgatgtcattgatttacatttggtttcgcctccacctatgct |
40581676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 100 - 229
Target Start/End: Complemental strand, 22619818 - 22619689
Alignment:
| Q |
100 |
aggatggaatagagttaattaaagagttgggaaagttcagacagttaaggaagttgagcttgttttatgtggcggcagaacattcaagcgctctatcttc |
199 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||| || ||||||||||| ||| | ||| || ||| ||||||| ||||||| ||||||| |
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| T |
22619818 |
aggatggaatagagttaattaaggagttgggaaagttgaggcagttaaggaaattgggtttggttggtgttagaagagaacatggaagcgctttatcttc |
22619719 |
T |
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| Q |
200 |
ctcactgaatgagatgcgacacttggagaa |
229 |
Q |
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| | |||||||| |||||||||||||||| |
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| T |
22619718 |
cgtattgaatgagctgcgacacttggagaa |
22619689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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