View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1528_low_15 (Length: 316)
Name: NF1528_low_15
Description: NF1528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1528_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 30 - 306
Target Start/End: Complemental strand, 52112219 - 52111943
Alignment:
| Q |
30 |
cgtgaaacagaacaacctacggctggtaataagcaatgtcctggaaaggattttgttgtgttgttttctagacttttggtggtggaactgtttcttcgtt |
129 |
Q |
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| T |
52112219 |
cgtgaaacagaacaacctacggctggtaataagcaatgtcccggaaaggattttgttgtgttgttttctagacttttggtggtggaactgtttcttcgtt |
52112120 |
T |
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| Q |
130 |
atgatacttttggtattcaagttggaaaatctcctataggatctgctgttacctttacctctctcaagaaagctaaattttagttttgtagttttgtttt |
229 |
Q |
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| T |
52112119 |
atgatacttttggtattcaagttggaaaatctcctataggatctgctgttacctttacctctctcaagaaagctaaattttagttttgtagttttgtttt |
52112020 |
T |
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| Q |
230 |
acttcataatacattttctggattaattattaattgtttaattgcatgtatatgcatgatgcatcccgcagcctatg |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
52112019 |
acttcataatacattttctggattaattattaattgtttaattgcatgtatatgcatgatgcatcccgcagcttatg |
52111943 |
T |
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