View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1528_low_19 (Length: 299)
Name: NF1528_low_19
Description: NF1528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1528_low_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 181; Significance: 8e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 13326333 - 13326137
Alignment:
| Q |
1 |
tcatcagaatgcatgccatcatgcactactagtggatccacttcaaacaccgtaccctttgggagagtacttggaacaatgtcatctgtaacattttgta |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13326333 |
tcatcagaatgcatgccatcatgcgctactagtggatccacttcaaacaccgtacccgttgggagagtacttggaacaatgtcatctgtaacattttgta |
13326234 |
T |
|
| Q |
101 |
attcaaaagaaaaagatgtagtttgagtgtcatgttgcttcggacccttagggtcttgagctggagctgaagtggttggaatcatgtttgcaacagc |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
13326233 |
attcaaaagaaaaagatgtagtttgagtgtcatgttgcttcggacccttagggtcttgagctggagctgaagtggttggaaccatgtttgtaacagc |
13326137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 8657162 - 8657351
Alignment:
| Q |
1 |
tcatcagaatgcatgccatcatgcactactagtggatccacttcaaacaccgtaccctttgggagagtacttggaacaatgtcatctgtaacattttgta |
100 |
Q |
| |
|
|||||| |||||| |||||| ||| ||||||||||||||| |||| ||| ||||| | | |||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
8657162 |
tcatcaaaatgcacgccatcgtgcgctactagtggatccatttcagacatcgtactcgtcgggagagtacctggaacaatgttgtctgtaacattttgta |
8657261 |
T |
|
| Q |
101 |
attcaaaagaaaaagatgtagtttgagtgtcatgttgcttcggacccttagggtcttgagctggagctgaagtggttggaatcatgtttg |
190 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||| | |||||||| |
|
|
| T |
8657262 |
attcaaaagaaaaagatgtggtttgagtgtcatgttgcttcggacccttagggtcttgtgccagagctgaagtggttgggaccatgtttg |
8657351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 30417727 - 30417539
Alignment:
| Q |
1 |
tcatcagaatgcatgccatcatgcactactagtggatccacttcaaacaccgtaccctttgggagagtacttggaacaatgtcatctgtaacattttgta |
100 |
Q |
| |
|
|||||| |||||| ||||| |||| ||||||||||||||| |||||||||||||| | | |||||||||| | |||||| ||| |||||||||||||||| |
|
|
| T |
30417727 |
tcatcaaaatgcacgccattatgcgctactagtggatccatttcaaacaccgtactcgtcgggagagtacctagaacaacgtcgtctgtaacattttgta |
30417628 |
T |
|
| Q |
101 |
attcaaaagaaaaagatgtagtttgagtgtcatgttgcttcggacccttagggtcttgagctggagctgaagtggttggaatcatgtttg |
190 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||| |
|
|
| T |
30417627 |
attcaaaagaaaaa-atgtggtttgagtgtcatgttgcttcggacccttagggtcttgtgccggagctgaagtggttggaaccatgtttg |
30417539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 2898901 - 2898705
Alignment:
| Q |
1 |
tcatcagaatgcatgccatcatgcactactagtggatccacttcaaacaccgtaccctttgggagagtacttggaacaatgtcatctgtaacattttgta |
100 |
Q |
| |
|
|||||| ||| || |||||| ||| ||||||| ||||||| |||||||||||||| | | |||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
2898901 |
tcatcaaaatacacgccatcgtgcgctactaggggatccatttcaaacaccgtactcgtcgggagagtacctggaacaatgtcgtctgtaacattttgta |
2898802 |
T |
|
| Q |
101 |
attcaaaagaaaaagatgtagtttgagtgtcatgttgcttcggacccttagggtcttgagctggagctgaagtggttggaatcatgtttgcaacagc |
197 |
Q |
| |
|
|| |||||||||||||||| |||||||||||| ||||||||||| ||||||||||||| || ||||||||||||||||||| | |||||| |||||| |
|
|
| T |
2898801 |
atgcaaaagaaaaagatgtggtttgagtgtcacgttgcttcggaaccttagggtcttgtgccggagctgaagtggttggaaccgtgtttgtaacagc |
2898705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 202 - 276
Target Start/End: Original strand, 21184654 - 21184728
Alignment:
| Q |
202 |
gctttgtcaaaaattcggtgccttctaccttctagtatgcttggtatttataggcaaagaagggctcaattgaat |
276 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
21184654 |
gctttctcaaaaattcggtgccttctaccttgtagtatgcttggtatttataggcaaagaagtgctcaattgaat |
21184728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 15469322 - 15469516
Alignment:
| Q |
1 |
tcatcagaatgcatgccatcatgcactactagtggatccacttcaaacaccgtaccctttgggagagtacttggaacaatgtcatctgtaacattttgta |
100 |
Q |
| |
|
|||||| |||||| |||||| ||| ||||||||| ||||| || ||||||||||| | | |||| || || |||||||||||| |||||||||||||||| |
|
|
| T |
15469322 |
tcatcaaaatgcacgccatcgtgcgctactagtgaatccatttgaaacaccgtactcgtcgggatagaacctggaacaatgtcgtctgtaacattttgta |
15469421 |
T |
|
| Q |
101 |
attcaaaagaaaaagatgtagtttgagtgtcatgttgcttcggacccttagggtcttgagctggagctgaagtggttggaatcatgtttgcaaca |
195 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| || |||||||||||||||| || |||||||| |||| |
|
|
| T |
15469422 |
attcaaaagaaaaagatgtggtttgagtggcatgttgcttcggacccttagggtcttgtgccggagctgaagtggttgcaaccatgtttgtaaca |
15469516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University