View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1528_low_2_N (Length: 448)
Name: NF1528_low_2_N
Description: NF1528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1528_low_2_N |
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Alignment Details
Target: chr5 (Bit Score: 400; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 30 - 433
Target Start/End: Original strand, 38380500 - 38380903
Alignment:
| Q |
30 |
gaaacaaactcatccgccgacatagatatttacatgtgattgaaccttccacttgcattcaaaagtccataattcctctttagcagaccatacatcaatt |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38380500 |
gaaacaaactcatccgccgacatagatatttacatgtgattgaaccttccacttgcattcaaaagtccataattcctctttagcagaccatacatcaatt |
38380599 |
T |
|
| Q |
130 |
tcattgcaaaaatctgtagtttgttttttcagaccgtgcatggagtgttcctctatctattatgtattgacaactacaaaatccactctttaaggtcatt |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
38380600 |
tcattgcaaaaatctgtagtttgttttttcagaccgtgcatggagtgttcctctatctattatgtattgacaactacaaaatccaccctttaaggtcatt |
38380699 |
T |
|
| Q |
230 |
cgtgcgtgagagttgttgttgcacaaccaaaacagatgcactactattaagatcaggtgaagcaagaaaatcaccaatagcaccaagttctggaaattca |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38380700 |
cgtgcgtgagagttgttgttgcacaaccaaaacagatgcactactattaagatcaggtgaagcaagaaaatcaccaatagcaccaagttctggaaattca |
38380799 |
T |
|
| Q |
330 |
ctccattctgctaatccatcagtttgaggagattgagtttcatgtcttctcccaactataaagaaatcatgttcgttcacaatctcacgtagaaaagatg |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38380800 |
ctccattctgctaatccatcagtttgaggagattgagtttcatgtcttctcccaactataaagaaatcatgttcgttcacaatctcacgtagaaaagatg |
38380899 |
T |
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| Q |
430 |
ctgt |
433 |
Q |
| |
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|||| |
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| T |
38380900 |
ctgt |
38380903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 180 - 433
Target Start/End: Original strand, 38389516 - 38389769
Alignment:
| Q |
180 |
ctctatctattatgtattgacaactacaaaatccactctttaaggtcattcgtgcgtgagagttgttgttgcacaaccaaaacagatgcactactattaa |
279 |
Q |
| |
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|||||||||| |||| |||||||||||||||||||| |||||||||||| | ||||||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
38389516 |
ctctatctatcatgtcttgacaactacaaaatccaccttttaaggtcatttgcgcgtgagagttgttgctgcacaaccaaaacagatgcattactattaa |
38389615 |
T |
|
| Q |
280 |
gatcaggtgaagcaagaaaatcaccaatagcaccaagttctggaaattcactccattctgctaatccatcagtttgaggagattgagtttcatgtcttct |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
38389616 |
gatcaggtgaagcaagaaaatcaccaatagcaccaagttctggaaattcactccattctgctaatccatcggtttgaggatattgagtttcatgtcttct |
38389715 |
T |
|
| Q |
380 |
cccaactataaagaaatcatgttcgttcacaatctcacgtagaaaagatgctgt |
433 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38389716 |
cccaactataaagaaatcatgttcgttcacaatctcacgtagaaaagatgctgt |
38389769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 194 - 433
Target Start/End: Original strand, 38398293 - 38398532
Alignment:
| Q |
194 |
tattgacaactacaaaatccactctttaaggtcattcgtgcgtgagagttgttgttgcacaaccaaaacagatgcactactattaagatcaggtgaagca |
293 |
Q |
| |
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|||| ||||||| ||||| |||| ||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
38398293 |
tatttacaactaaaaaattcactttttaacgtcattcacacgtgaaagttgttgttgcacaaccaaaacagatgcactactattaagatcaggtgaaaca |
38398392 |
T |
|
| Q |
294 |
agaaaatcaccaatagcaccaagttctggaaattcactccattctgctaatccatcagtttgaggagattgagtttcatgtcttctcccaactataaaga |
393 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38398393 |
agaaaatcaccaatagcaccgagttctggaaattcactccattctgctaatccatcagtttgaggagattgagtttcatgtcttctcccaactataaaga |
38398492 |
T |
|
| Q |
394 |
aatcatgttcgttcacaatctcacgtagaaaagatgctgt |
433 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
38398493 |
aatcatgttcgttcacaatctcacgtagaaaagatgctgt |
38398532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 115 - 188
Target Start/End: Original strand, 38389419 - 38389491
Alignment:
| Q |
115 |
gaccatacatcaatttcattgcaaaaatctgtagtttgttttttcagaccgtgcatggagtgttcctctatcta |
188 |
Q |
| |
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||||||||| |||||||||||||||||||||||||| |||||| ||| |||||| ||||| |||||||||| |
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| T |
38389419 |
gaccatacaaaaatttcattgcaaaaatctgtagttt-atttttctgactatgcatgaagtgtgcctctatcta |
38389491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 63
Target Start/End: Original strand, 38398267 - 38398300
Alignment:
| Q |
30 |
gaaacaaactcatccgccgacatagatatttaca |
63 |
Q |
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|||||||||||||| ||||||||||||||||||| |
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| T |
38398267 |
gaaacaaactcatctgccgacatagatatttaca |
38398300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 170; Significance: 4e-91; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 201 - 430
Target Start/End: Complemental strand, 37841588 - 37841359
Alignment:
| Q |
201 |
aactacaaaatccactctttaaggtcattcgtgcgtgagagttgttgttgcacaaccaaaacagatgcactactattaagatcaggtgaagcaagaaaat |
300 |
Q |
| |
|
|||||||||| |||| |||| |||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
37841588 |
aactacaaaacccaccctttgaggtcattcgaacatgagagttgttgttgaacaaccaaaacagatgcactactattaagatcgggtgaagcaagaaaat |
37841489 |
T |
|
| Q |
301 |
caccaatagcaccaagttctggaaattcactccattctgctaatccatcagtttgaggagattgagtttcatgtcttctcccaactataaagaaatcatg |
400 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
37841488 |
caccaatagctccaagttctggaaattcactccattctgccaatccatctgtttgaggagattgagtttcatgtcttctcccaactataaaaaaatcatg |
37841389 |
T |
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| Q |
401 |
ttcgttcacaatctcacgtagaaaagatgc |
430 |
Q |
| |
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||| |||| |||||||||||||||||||| |
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| T |
37841388 |
ttcattcattatctcacgtagaaaagatgc |
37841359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 180 - 274
Target Start/End: Complemental strand, 37845385 - 37845291
Alignment:
| Q |
180 |
ctctatctattatgtattgacaactacaaaatccactctttaaggtcattcgtgcgtgagagttgttgttgcacaaccaaaacagatgcactact |
274 |
Q |
| |
|
|||| ||||| |||| ||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
37845385 |
ctctttctatcatgtcttggcaactacaaaatccaccctttaaggtcattcgtgtgtgagagttgttgttgcacaaccaaaacaaatgcactact |
37845291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 151
Target Start/End: Complemental strand, 37841668 - 37841618
Alignment:
| Q |
101 |
attcctctttagcagaccatacatcaatttcattgcaaaaatctgtagttt |
151 |
Q |
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||||||||||||||| |||||||| ||||| ||||||||||| |||||||| |
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| T |
37841668 |
attcctctttagcaggccatacataaattttattgcaaaaatttgtagttt |
37841618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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