View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1528_low_3_N (Length: 446)
Name: NF1528_low_3_N
Description: NF1528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1528_low_3_N |
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Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 30 - 431
Target Start/End: Complemental strand, 8757441 - 8757041
Alignment:
| Q |
30 |
tccttatggtgcttaacttattagtagattttt-aacacgctcaacgttaacatgtaatctttgcaatttggcataacatgattagctcctcctagaaac |
128 |
Q |
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| T |
8757441 |
tccttatggtgcttaactttttagtagattttttaacacgctcaacgttaacatgtaatctttgcaatttggcataacatgattagctcctcctagaaac |
8757342 |
T |
|
| Q |
129 |
taatcaattgtattgctatacatttaagaataaacatattaggccattacttttttcttaccctattagtttctcgtccgccctattcggagtctaaaat |
228 |
Q |
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| T |
8757341 |
taatcaattgtattgctatagatttaaaaataaacatattaggccattac--ttatcttaccctatgagtttctcgccctccttatttggagtctaaaat |
8757244 |
T |
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| Q |
229 |
tcaaaatgtttacatgtgttttcgaggtttttatggggtattaatgccgttcggattgcata-ggcgcacgagaaactcataggattgaaaaaagaagta |
327 |
Q |
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| T |
8757243 |
ccaaaatgtttccatgtgttttcgaggtttttatggggtattaatgccgtttggattgcatagggcgcacgaaaaactcataagggtgaaaaaagaagct |
8757144 |
T |
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| Q |
328 |
gtcaaaaatattatgctaagaatcatggcccaagatgtctagggcctacagacggttagtgggttgtagccttgtaagtctacatattggttggattggg |
427 |
Q |
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| T |
8757143 |
gtc-aaaatattatgctaagaatcatggcccaaggtgtctagggcctacagacggttagtgggttgtagccttgtaagtctacatattggttggattggg |
8757045 |
T |
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| Q |
428 |
caac |
431 |
Q |
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| T |
8757044 |
caac |
8757041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 188 - 285
Target Start/End: Original strand, 37507546 - 37507643
Alignment:
| Q |
188 |
accctattagtttctcgtccgccctattcggagtctaaaattcaaaatgtttacatgtgttttcgaggtttttatggggtattaatgccgttcggatt |
285 |
Q |
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| T |
37507546 |
accctatgagtttcttgcgcgccctattcgaattctaaaatccgaaatgtttcaacgtgttttggaggtttttatggggtatttatgtcgttcagatt |
37507643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 270
Target Start/End: Original strand, 36183326 - 36183415
Alignment:
| Q |
181 |
ttttcttaccctattagtttctcgtccgccctattcggagtctaaaattcaaaatgtttacatgtgttttcgaggtttttatggggtatt |
270 |
Q |
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| T |
36183326 |
ttttctcatcctatgagtttctcgtgcgccatattcggattctaaaatccgaaatgtttcaacatattttggaggtttttatggggtatt |
36183415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 264
Target Start/End: Original strand, 32075868 - 32075921
Alignment:
| Q |
211 |
ctattcggagtctaaaattcaaaatgtttacatgtgttttcgaggtttttatgg |
264 |
Q |
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| T |
32075868 |
ctattcggattctaaaatccaaaatgttttaacgtgttttagaggtttttatgg |
32075921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 281
Target Start/End: Original strand, 51715028 - 51715113
Alignment:
| Q |
196 |
agtttctcgtccgccctattcggagtctaaaattcaaaatgtttacatgtgttttcgaggtttttatggggtattaatgccgttcg |
281 |
Q |
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| T |
51715028 |
agtttctcgcgcgcccgattcggattctaaaatctgaaatgttttaacgtgttttggaggtttttatggggtgtttatgctgttcg |
51715113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 285
Target Start/End: Original strand, 39791203 - 39791307
Alignment:
| Q |
181 |
ttttcttaccctattagtttctcgtccgccctattcggagtctaaaattcaaaatgtttacatgtgttttcgaggtttttatggggtattaatgccgttc |
280 |
Q |
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|||||| ||||||| |||||||| | || |||||| | | |||||||| | |||| ||| | ||||||| || |||||||||||| || ||||||||| |
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| T |
39791203 |
ttttctcaccctataagtttctcatgcgtcctatttgaattctaaaatccgaaatatttcaacgtgttttgaagatttttatggggtgtttatgccgttc |
39791302 |
T |
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| Q |
281 |
ggatt |
285 |
Q |
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||||| |
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| T |
39791303 |
ggatt |
39791307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 278
Target Start/End: Original strand, 48400944 - 48401012
Alignment:
| Q |
210 |
cctattcggagtctaaaattcaaaatgtttacatgtgttttcgaggtttttatggggtattaatgccgt |
278 |
Q |
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| T |
48400944 |
cctattcggattctaaaatccgaaatgttttaacgtgttttggaggtttttatagggtgtttatgccgt |
48401012 |
T |
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