View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1528_low_5 (Length: 410)
Name: NF1528_low_5
Description: NF1528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1528_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 42691488 - 42691849
Alignment:
| Q |
1 |
ccaacaaaatcgacatcatcctcgacatcgtcaaggaattcgaacttcattacaatactttaactgacacagagcttgttgtggtgacttcagtggtgaa |
100 |
Q |
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| T |
42691488 |
ccaacagaatcgacatcatcctcgaaatcgtcaaggaattcgaacttcattacaatactttaactgacacagagcttgttgtggtgacttcagtggtgaa |
42691587 |
T |
|
| Q |
101 |
attggagtctcagcatttggcgcagattgcgaaacaggtgcagaaacttactggggcgaagaatgtgaggattaaaaccaatcttgacccgagtttagtg |
200 |
Q |
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| T |
42691588 |
attggagtctcagcatttggcgcagattgcgaaacaggtgcagaaacttactggggcgaagaatgtgaggattaaaaccaatcttgacccgagtttagtg |
42691687 |
T |
|
| Q |
201 |
gcgggttttactgtcaggtatggtaattctgggtctaagtttattgatatgagtgttaagaagaaacttgaggaaattgcttctcaacttgatttgggtg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42691688 |
gcgggttttactgtcaggtatggtaattctgggtctaagtttattgatatgagtgttaagaagaaacttgaggaaattgcttctcaacttgatttgggtg |
42691787 |
T |
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| Q |
301 |
atatcaaacttgctgtgtgagaattcttcaggctttgtttcaatttggtttactcaaattgt |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42691788 |
atatcaaacttgctgtgtgagaattcttcaggctttgtttcaatttggtttactcaaattgt |
42691849 |
T |
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